Detailed information on CNT30579831


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00827|CB48_MAIZE, E-value = 2e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371011Echinochloa crusgalliOryza glumipatula22.7531.8596.14207forward
CNT30108138Echinochloa crusgalliOryza longistaminata22.5325.3195.61205forward
CNT30149001Echinochloa crusgalliBrachypodium distachyon21.5447.4692.35196forward

Expression of CNT30579831

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVMRPSPKTSLAPVAGLLTRAREVRAMVAAAMSIGSDHSLLWMMRCSVLCSSVM

>peptide 2 (95 aa)
ILKIYNWMHISLIPSRTCVQIHYWYTAACDPRAPITHTCTPCSTYEYVRLRYTHATPPTVASSRVATRHPHHSCPASSSLTCRGRSWWRRPMRCC*

>peptide 3 (57 aa)
MACTKNPNMENMARRPFLISFTLSSAKASGSSARPRWPGCSARGPGSGCPGSPARPR*

>peptide 4 (63 aa)
YIKNLQLDAYFIDPVQNMRTNTLLVHSSLRSQGSHHTYLYTLQYIRIRTSTVHARDPTHGRFI*

Sequence

>CNT30579831
TATATTAAAAATTTACAACTGGATGCATATTTCATTGATCCCGTCCAGAACATGCGTACAAATACACTACTGGTACACAGCAGCCTGCGATCCCAGGGCT
CCCATCACACATACTTGTACACCCTGCAGTACATACGAATACGTACGTCTACGGTACACGCACGCGACCCCACCCACGGTCGCTTCATCTAGAGTAGCAA
CGCGTCATCCACACCACTCATGCCCAGCCTCGAGCTCGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCG
AGGTGGTCGGCGAGGTTCTCGAGTGGGCCTTTGCCGGTGACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCT
CCTTCACCTTGAGCTCCGCGAAGGCCTCCGGGTCGTCGGCGAGGCCCAGATGGCCAGGATGCTCTGCGCGTGGACCAGGCTCGGGTTGCCCAGGTAGTCC
AGCCCGCCCTCGCTGAAGATCTGGGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCAGGAGCTCCGGGAACACGCAGCCCG
CGGTGTCCCAGCCGTAGTCGCCGGGGAACTCACCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTACAGGACGCGGTCGGGCCCGTACCA
CGGGCTGCCGGACGCTGCCGGTTTGGGCTTGGCAGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGACGTCCCTGGCGCCGGTCGCCGGCTTGCTG
ACGAGAGCGCGGGAGGTGAGAGCCATGGTGGCGGCGGCCATGTCGATCGGATCAGATCACTCCTTGCTGTGGATGATGCGTTGCTCTGTGTTGTGTTCTA
GTGTGATGAT