Detailed information on CNT30579803


BLAST search results

BLAST vs Swiss-Prot:
sp|P17801|KPRO_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30139133Echinochloa crusgalliLolium perenne3.0528.6286.0879forward

Expression of CNT30579803

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVPSLVSGHNQDVAFLKEANWFGELEYLKYSHPLGV*

>peptide 2 (37 aa)
MLSLNRMFANDPFSIYSVTNILCELSEQKPHILTRFI*

>peptide 3 (32 aa)
MKYVVTWEMQSRCGDQLCSCSDALGGQQGICW*

>peptide 4 (41 aa)
MINPPNDPQLCLKLLLALPYIFQHLNSHCSTVVQDSLVNNP*

>peptide 5 (53 aa)
MRWVGSRVSVGESKLCHTTMPLEFFMTRFPVSRSSAYCTPARSPSACHTTAPS*

>peptide 6 (61 aa)
MKLNCLFSLQSTTSAIEEDSPLSNISASIPTSLLSTLCASSAPIAKSRTRFPNTSSRRTTP*

>peptide 7 (64 aa)
MCCLASAGRQSGACRRRARILAAECQEMLRLRGGEAVIGLAGRRRRVPWLESGQMVEEELARCF*

>peptide 8 (69 aa)
MPSHYKGKPSDSMSLILAGTESPCRCNHSYICSCKPARIYAQHALDLIPKSQCLEVVRTLQVAFAQPYR*

Sequence

>CNT30579803
CTCACATCCTACTTAATATTTCCACTTGTCAGTAATTCGTTACATGGATCATCACCCTAGCGCATACTAGAAGATTCATCAGCTAAAAGGAGAATCTGCA
CTATATATTCCATTGTTGGTCTTCTGCTTCTGTCTTCATGCAGGCATGAGACAGCCAATTCGATCAGTGTTCTTACCTGCATGAAGTTAAATTGTCTGTT
TAGCCTGCAATCTACAACCTCAGCTATTGAAGAGGACTCTCCTTTATCCAACATATCAGCTAGCATTCCTACAAGCTTACTGAGCACCTTGTGTGCCTCC
TCAGCACCTATAGCCAAGTCAAGAACTCGTTTTCCCAACACTAGCTCAAGAAGGACAACCCCGTAGCTATACACGTCAACTTTGGCCGTGATTTGCAGGC
TGCTGATCCACTCTGGAGCGATGTAACCTATAGTTCCTCGCACTCTCGACACATTCTGATTGGAGCCACCTCTGTTCAGGAGCTTTGCCAACCCAAAGTC
AGCAATCTTAGGTTCTAGATTCTGATCCAAAAGGATGTTCTCCGGCTTCACGTCGCAGTGTATTACCCACTCAAGACATTCATGGTGAAGATAAGCCAAA
CCCTTTGCGACACCTAACGCAATATTAAATCTCTGCCTCCACTCTAGCAGAATGTTGTCTTTGAATAGGATGTTTGCTAATGATCCATTCTCAATATACT
CAGTGACCAACATCCTGTGTGAGCTTTCAGAGCAAAAGCCCCATATCCTTACTAGATTCATATGATTAATCCTCCCAATGATCCGCAACTCTGCTTGAAA
CTCCTCCTCGCACTGCCTTACATTTTCCAGCATCTTAACAGCCACTGCTCGACTGTCGTCCAAGATTCCCTTGTAAACAATCCCTGAGCCTCCTCTTCCA
AGCTCATCTTTGAACTTTCTGGTTGCTTTAACCAACTCTTTGTAACTGTATCTTCTGAAATTACTAGTCATCACCTTGTAGCCTTCCTCAACTGCTTGTA
TCTCGGATGCTCTCAACTCCCGTCTAAAAACGAAGCACCATGCGGATGTAATGAAGAGAACTTCAAGAACAAAAATTGCACCTGCAAACCCATAGAAGTA
AAACCATTTTGCTTCCCCCTGACTGGTCGTGTGAATATCCGGAAATGGTTCCATCGTTGGTATCTGGCCACAATCAGGATGTTGCTTTCTTGAAAGAAGC
AAATTGGTTTGGGGAATTGGAATACCTGAAATATTCACACCCACTGGGAGTTTGAGATACATCAAGCGCGTTGATTTTGTAGGTGAGGTGTATGCCTTCC
CATTATAAAGGGAAGCCTTCGGATAGCATGTCCCTGATCCTTGCTGGTACTGAAAGCCCTTGCAGGTGCAATCACTCCTACATATGTTCTTGCAAGCCTG
CAAGGATATATGCTCAACATGCTCTTGATCTGATCCCCAAAAGTCAGTGCCTGGAAGTAGTAAGAACTTTACAGGTTGCATTTGCTCAACCATACAGGTG
ATGTCTACTACAGCTCTACAGCCTTGGCTCCAATTACCAGGGTTGCTCATCACGTAACCTGGTGGGCAAGAGCATGTAGGCATAGGCAAGTAGTGACAGA
TCCCATTTGGACCACACAATCCATGAATATTGCAGGGCTGAGACATTGCAATCCAGGAAACCGACCATCTCCCATCTGAATTGTTCAAGCTGTACAGTCG
GAGATTGCCGTCAGGATCCAGAGTAAGCCGTCTCTTGATCCCATAACCTTCATCAGAGGCAACAACTGCTTTCTGGTTAGCGAAATCACTTGAAAAGAAA
TTTCCCATTTCATCTAGAACCGCGAGCCTTGTACTGTTATACCGATTCCTGTTATTCTGATACTCTCCAGTGTCAGGGTCTGGCCAATATATTTCATGAA
CATCGACATCATCGTATATAAGGGACAATATTGATGAGTCTGTGAAATGAAATATGTAGTGACCTGGGAGATGCAATCCCGTTGTGGAGACCAGCTTTGT
AGCTGCAGTGATGCGCTGGGTGGGCAGCAGGGTATCTGTTGGTGAATCAAAGCTCTGCCACACAACCATGCCGCTGGAGTTCTTCATGACAAGGTTCCCG
GTGTCCAGGAGCTCGGCATACTGCACCCCTGCCAGGTCCCCTTCTGCTTGCCACACCACTGCACCGTCGTAGTCTGTGAGAACCAAGGCACCGTCCTTCC
GCAGGGTCACCGCCGCCCTCCTGGCGTGCACGGGGCGGTCGCGGTTCGCAGTCCAGACGACAGTCTTGTTCGCCGAGTTGGTGTACCATATTGAGAAGGT
GAAGGCATTGTCGTAGATGCTGTAGAAGCCGCAGGTGAATGTGCTGTTTGGCGAGCGCAGGACGTCAGTCTGGTGCTTGTCGACGGAGAGCGAGGATCTT
AGCGGCAGAGTGCCAGGAGATGCTGCGCTTGAGAGGAGGGGAAGCAGTGATAGGACTTGCAGGAAGGAGAAGAAGGGTGCCATGGCTGGAGTCTGGGCAG
ATGGTTGAGGAAGAGCTCGCGCGGTGCTTCTAAAGAGCTCATACGACCAAAGTGTAGTTCTGAAATCTCCTCTCTGGTGGTGTGCCCTC