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Detailed information on CNT30579791


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522256Echinochloa crusgalliSetaria italica11.7531.6293.24148forward
CNT30586176Echinochloa crusgalliMusa acuminata19.640.4987.04247forward
CNT30443231Echinochloa crusgalliAegilops tauschii16.6748.9583.81210forward
CNT30662885Echinochloa crusgalliTriticum dicoccoides11.1161.488.57140forward
CNT30136463Echinochloa crusgalliLolium perenne21.5136.9790.41271forward
CNT301194Echinochloa crusgalliZea mays21.0353.1193.58265forward
CNT3066802Echinochloa crusgalliLeersia perrieri8.3344.392.38105forward
CNT30623609Echinochloa crusgalliDaucus carota11.3525.4480.42143forward
CNT30322744Echinochloa crusgalliAsparagus officinalis7.1426.639090forward

Expression of CNT30579791

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MDAPSNAPPTRMLAPTMKPMAMGAMVPRLPFLGSTASGGRCAAAGQLACASERGEHIKDCKTCHQSNLQVPWRKQHMETLHSIRDSHRRY*

>peptide 2 (66 aa)
MPEPWPAKTKMRVEMNSANAALRAPGWYTSWWLPTAMLRIGIFAALELALDLTLTTGDCLCLELDAM

>peptide 3 (77 aa)
VRNPRWLQFQLIDRSKPCERRSSGLSWVLHFMAVDAMRCNAKLNGGDVGRLDDHQTDGVEPAAAAAAARRLATGVAQ*

>peptide 4 (51 aa)
PESTVVTVPTDRSKQTMRAAQQRIELGVTFHGGRCDAMQCKTKRRRCRTTG*

>peptide 5 (44 aa)
MSDDWMIIKRTELNRLLRRRRRGDWLPESLSSRWWGAARGRCWR*

>peptide 6 (38 aa)
MITELNTSSTLINHSTKKTSLHYPSLLTFFKKETSLSF*

>peptide 7 (32 aa)
MIYCTYRPTTRLLIMLYILIHIHVMRVDAKHQ*

Sequence

>CNT30579791
GTCCGGAATCCACGGTGGTTACAGTTCCAACTGATCGATCGAAGCAAACCATGCGAGCGGCGCAGCAGCGGATTGAGTTGGGTGTTACATTTCATGGCGG
TCGATGCGATGCGATGCAATGCAAAACTAAACGGCGGCGATGTCGGACGACTGGATGATCATCAAACGGACGGAGTTGAACCGGCTGCTGCGGCGGCGGC
GGCGCGGCGACTGGCTACCGGAGTCGCTCAGTAGTCGGTGGTGGGGAGCTGCTCGTGGCCGGTGCTGGAGATGAAGAGCACCTCGTAGATGACGCCGGCG
AGGCCGCCGCCGATGAGCGGGCCGACCCAGTAGACCCACTGGTACCCCCACTCCCAGCTGACGAGGGCGGGGCCGAAGGACACGGCGGGGTTCATGGACG
CGCCGTCGAATGCGCCGCCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGGGCGATGGTGCCCAGGCTGCCCTTCTTGGGGTCCACGGC
CAGCGGGGGTCGTTGCGCCGCCGCCGGACAGCTTGCCTGCGCGAGCGAACGAGGGGAGCACATCAAGGATTGCAAAACGTGTCATCAGAGCAATTTGCAA
GTTCCTTGGCGTAAGCAGCACATGGAGACTCTGCACAGCATCAGAGACTCGCATAGAAGGTACTGATTCTGCCAAGGATTCCTCTACCTTCTCTACATGA
TCACAGAGCTAAACACGTCATCTACACTAATCAATCATTCCACCAAAAAGACTTCACTTCACTATCCCTCACTTTTGACTTTTTTTAAAAAAGAAACTTC
TCTGAGCTTCTAGTGACACCATCTAATAAAAACTTGTTCTGCCAAAGAAAAGGACCTTATCTTTTCTCCAGTTCAGTGACGAACTCAGAGAACCGACCAT
ATGGACTTTTCTGCTATTAGTGAGTACTGACATGATATACTGTACATACAGACCAACTACTCGTCTACTAATAATGCTCTACATACTAATCCATATCCAT
GTTATGCGAGTGGACGCAAAACACCAATAAGAGCGAGGGGGGCACTCACTGAAGGCCATGCCGGAGCCCTGGCCGGCGAAGACGAAGATGAGGGTGGAGA
TGAACTCAGCGAACGCCGCCTTGAGGGCACCCGGGTGGTACACCTCCTGGTGGCTCCCGACGGCGATGTTACGGATCGGCATTTTCGCGGCCCTCGAGCT
AGCTCTCGATCTCACTCTAACCACAGGAGACTGTCTGTGCTTGGAGCTCGATGCGATGCG