Detailed information on CNT30579779


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 5e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298810Echinochloa crusgalliTriticum aestivum35.8284.6889.2398forward

Expression of CNT30579779

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRFRAKVSGSAESPAVSHP*

>peptide 2 (39 aa)
SGNPSRYLRKKQCRLIKRCFTHECYTYTIDSSADISIRA*

>peptide 3 (33 aa)
MYRQRQLLMWSLVSTEHTPARAKLLHAYCNKAE*

>peptide 4 (46 aa)
MEHDVPDALGSALDGAAHGDAAAGIGAGDGAGDQGLPEEAGGLVER*

>peptide 5 (43 aa)
MARARSPERSLTCRGRSWWRRPMRCWRPGPRRGRRGSRWAPSR*

>peptide 6 (63 aa)
MLWGALLTVRRMVMRPPASAPETGRETRACPRKLVVWWSADAAIFSISGGELSTTCSGIGERSI

>peptide 7 (58 aa)
MGPFPVTMACTKKPNMENMARRPFLSSLTLSSAAPMSTTWQAQMARMLCACTRLGLPR*

Sequence

>CNT30579779
TCCGGAAATCCGTCACGCTACTTAAGAAAGAAACAATGTCGATTGATCAAACGATGTTTCACTCACGAATGTTACACGTACACCATTGATTCATCAGCTG
ACATAAGCATCCGTGCCTAGTTTACAATCTCACACCACATGTACAGGCAGAGGCAGCTGCTGATGTGGTCACTGGTCAGCACAGAGCATACGCCGGCGCG
TGCAAAACTACTACACGCCTACTGCAACAAAGCAGAGTAGAGTACACAGGGCCACAGGGGCATGGCTCGAGCTCGATCGCCGGAGCGCTCGCTCACTTGC
CGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGGCGACCGGGTCCGCGACGTGGTCGAAGAGGTTCTCGATGGGCCCCTTCCCGGTGACGATGGC
CTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGGCGCCCATGAGCACGACCTGGCAGGCC
CAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGG
CCTCGCCAAACTTGACGCCGTTCTTGGCCAGGATCTCCGGGAACACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGGAGTGGATCACCTCCAGCTCGCG
GTTCCGGGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTACTTGGGACGGTCAGGGCCGTACCT
GCACGCGATCGATGAACATATATATATATTTATATATATATCATCTCTTGTCGATAATGATGGAATTGACATGAACACAGCTAATATATAAGAATGACAT
ATGGAGCACGACGTACCAGATGCTCTGGGGAGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCGCCGGCATCGGCGCCGGAGACGGGGCGGGAGACC
AGGGCCTGCCCGAGGAAGCTGGTGGTCTGGTGGAGCGCTGACGCGGCCATCTTCTCGATCTCCGGCGGTGAGCTGAGCACGACGTGTAGTGGGATTGGTG
AGCGATCGATC