Detailed information on CNT30579749


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524797Echinochloa crusgalliPhaseolus vulgaris23.9821.0984.35147forward
CNT30146554Echinochloa crusgalliMedicago truncatula13.0521.568580forward
CNT30721484Echinochloa crusgalliTriticum spelta22.1918.687.5136forward
CNT30361046Echinochloa crusgalliSorghum bicolor47.3146.5589.66290forward
CNT30154895Echinochloa crusgalliPrunus persica22.3518.1584.67137forward
CNT30706772Echinochloa crusgalliPrunus avium17.4630.4889.72107forward
CNT3057335Echinochloa crusgalliAmborella trichopoda24.843.6882.89152forward

Expression of CNT30579749

Peptides detected in this lncRNA

>peptide 1 (77 aa)
VRNPRWLQFQLIDRSKPCERRSSGLSWVLHFMAVDAMRCNAKLNGGDVGRLDDHQTDGVEPAAAAAAARRLATGVAQ*

>peptide 2 (48 aa)
MSDDWMIIKRTELNRLLRRRRRGDWLPESLSSRCQGAGRSSTGGRGTG*

>peptide 3 (51 aa)
PESTVVTVPTDRSKQTMRAAQQRIELGVTFHGGRCDAMQCKTKRRRCRTTG*

>peptide 4 (52 aa)
MLPPTKAPKVTAGFTCPPEMLAPTDTATNRAKACATAAEIRPCRSPGRRRRR*

>peptide 5 (66 aa)
MPEPWPAKTKMRVEMNSANAALRAPGWYTSWWLPTAMLRIGIFAALELALDLTLTTGDCLCLELDAM

Sequence

>CNT30579749
GTCCGGAATCCACGGTGGTTACAGTTCCAACTGATCGATCGAAGCAAACCATGCGAGCGGCGCAGCAGCGGATTGAGTTGGGTGTTACATTTCATGGCGG
TCGATGCGATGCGATGCAATGCAAAACTAAACGGCGGCGATGTCGGACGACTGGATGATCATCAAACGGACGGAGTTGAACCGGCTGCTGCGGCGGCGGC
GGCGCGGCGACTGGCTACCGGAGTCGCTCAGTAGTCGGTGCCAAGGAGCTGGGCGATCCAGTACAGGAGGCCGCGGAACAGGGTGATGTTGCCGCCCACG
AAGGCGCCGAAGGTCACGGCGGGGTTCACGTGCCCGCCGGAGATGTTGGCGCCAACGGACACGGCCACGAACAGGGCGAAGGCGTGCGCCACCGCCGCGG
AGATCAGGCCATGCCGGAGCCCTGGCCGGCGAAGACGAAGATGAGGGTGGAGATGAACTCAGCGAACGCCGCCTTGAGGGCACCCGGGTGGTACACCTCC
TGGTGGCTCCCGACGGCGATGTTACGGATCGGCATTTTCGCGGCCCTCGAGCTAGCTCTCGATCTCACTCTAACCACAGGAGACTGTCTGTGCTTGGAGC
TCGATGCGATGCG