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Detailed information on CNT30579738


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522168Echinochloa crusgalliSetaria italica46.2462.1196.67541forward
CNT30589923Echinochloa crusgalliMusa acuminata38.5599.3486.47451forward
CNT30142779Echinochloa crusgalliLolium perenne47.8663.1385.18560forward
CNT30877Echinochloa crusgalliZea mays48.0366.0494.84562forward
CNT30685647Echinochloa crusgalliTriticum urartu42.3166.7189.49495forward

Expression of CNT30579738

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYRQRQLLMWSLVSTEHTPARAKLLHAYCNKAE*

>peptide 2 (29 aa)
MAHREWITSSSRFRAKVSGSAESPAVSHP*

>peptide 3 (65 aa)
MGPFPVTMACTKKPNMENMARRPFLSSLTLSSAAVSGSSARPSGTTWQAQMARMLCACTRLGLPR*

>peptide 4 (46 aa)
MEHDVPDALGSALDGAAHGDAAAGIGAGDGAGDQGLPEEAGGLVER*

>peptide 5 (63 aa)
MLWGALLTVRRMVMRPPASAPETGRETRACPRKLVVWWSADAAIFSISGGELSTTCSGIGERSI

>peptide 6 (39 aa)
SGNPSRYLRKKQCRLIKRCFTHECYTYTIDSSADISIRA*

>peptide 7 (43 aa)
MARARSPERSLTCRGRSWWRRPMRCWRPGPRRGRRGSRWAPSR*

Sequence

>CNT30579738
TCCGGAAATCCGTCACGCTACTTAAGAAAGAAACAATGTCGATTGATCAAACGATGTTTCACTCACGAATGTTACACGTACACCATTGATTCATCAGCTG
ACATAAGCATCCGTGCCTAGTTTACAATCTCACACCACATGTACAGGCAGAGGCAGCTGCTGATGTGGTCACTGGTCAGCACAGAGCATACGCCGGCGCG
TGCAAAACTACTACACGCCTACTGCAACAAAGCAGAGTAGAGTACACAGGGCCACAGGGGCATGGCTCGAGCTCGATCGCCGGAGCGCTCGCTCACTTGC
CGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGGCGACCGGGTCCGCGACGTGGTCGAAGAGGTTCTCGATGGGCCCCTTCCCGGTGACGATGGC
CTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGGCGGTGTCCGGGTCGTCGGCGAGGCCC
AGCGGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCG
CGCCGGCCTTGAACCACACGGCCTCGCCAAACTTGACGCCGTTCTTGGCCAGGATCTCCGGGAACACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGGA
GTGGATCACCTCCAGCTCGCGGTTCCGGGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGG
TACGACGGCGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTACCTGCACGCGATCGATGAACATATATATATATTTATATATATAT
CATCTCTTGTCGATAATGATGGAATTGACATGAACACAGCTAATATATAAGAATGACATATGGAGCACGACGTACCAGATGCTCTGGGGAGCGCTCTTGA
CGGTGCGGCGCATGGTGATGCGGCCGCCGGCATCGGCGCCGGAGACGGGGCGGGAGACCAGGGCCTGCCCGAGGAAGCTGGTGGTCTGGTGGAGCGCTGA
CGCGGCCATCTTCTCGATCTCCGGCGGTGAGCTGAGCACGACGTGTAGTGGGATTGGTGAGCGATCGATC