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Detailed information on CNT30579660


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695219Echinochloa crusgalliOryza sativa54.363.4494.82328forward
CNT30522020Echinochloa crusgalliSetaria italica55.1370.2596.4333forward
CNT30570681Echinochloa crusgalliVitis vinifera21.699.5886.26131forward

Expression of CNT30579660

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MMAAARRWRVAAEACVAMAMAAGSERADGDRRWSWRRMRE*

Sequence

>CNT30579660
GTCGTAACGTTCGTTAGCAGCGTGGGCGTCGAACGATCAGTCACCAAAATTAAATCAACATGTACATATAATCCCATGTAGTAGCTCCAGAATCACCAAG
AAAGTAAAATTACATATCGACCCTCCATATCTCAAACCACCCAACAACGTACACCATCATCATTCTAGCTTAGAGGTCGAAGGTGTTCTTGCCGGTGAAC
TTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGG
GGTGGAGGTACTGCACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGCAGCCTGGTGCCCAGCGCCAGGCACTGCTC
CTTGCGCGCCAGCTTCAGCAGGTTGGGCCCCTCCCGCATGATGGCGGCGGCCAGGAGGTGGCGCGTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGCT
GCGGGGAGCGAGCGCGCGGATGGGGATCGGCGGTGGAGCTGGAGGAGGATGAGAGAATGATGAGTAGTGGCCTAGGGCGCGGCGGTGGCAGGGAGCTAAG
AGGT