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Detailed information on CNT30579413


BLAST search results

BLAST vs Swiss-Prot:
sp|P84563|PSAD_POPEU, E-value = 3e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695265Echinochloa crusgalliOryza sativa42.7857.2992.44397forward
CNT30517240Echinochloa crusgalliJuglans regia9.9130.4684.7892forward
CNT30299761Echinochloa crusgalliTriticum aestivum35.6785.0992.15331forward
CNT30395284Echinochloa crusgalliTriticum turgidum42.4657.2791.12394forward
CNT30665641Echinochloa crusgalliTriticum dicoccoides42.4651.7191.12394forward
CNT30596768Echinochloa crusgalliOryza meridionalis4350.9691.23399forward
CNT30148465Echinochloa crusgalliBrachypodium distachyon39.1246.7887.88363forward
CNT30577551Echinochloa crusgalliOryza barthii44.2947.990.75411forward

Expression of CNT30579413

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MGDGVLGSSCGGTNPLGASAVAAAADSSAAARRGAGPRLEDDGMNACWEARGALAGDQAAARRWRVAAEACVAMAMADGDRRSWSCWSKMRGC*

Sequence

>CNT30579413
ATCAATTCTTCAAGTTTATAATCGCTAGCTAGTTAACTACCCTGTGATTTTTTAGCAAGAAGGGCCGTAACGTTCGTCAGCGTGTGGGCATCTAACGACC
AGTCACCAAAATTAAATCAACATGTACATATAATTCCATGTAGCAGCTCCAGAATCACCAAGAAAGTAAAATTACATATCGACCCTCCATCAAACCACCC
AACAACACCATCATCAGCAGCTAATTAATTAACGATCGGATTGCGCGCGCGGGACGATCGACGACGAGATGAAGATTGATTCTTAGAGGTCGAAGGTGTT
CTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAG
ACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGCAGCCTGCTTCAGCAGG
TTGGGCCCCTCCCGCATGATGGCGGCGCCGCCCGTCGGCATCTCGAACACCTGCTCCTTGGGGGAGCTCCACGTGATCACGTAGAACTCCTCCACCTGCG
CCTTGCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGCGACGGGGTGTTGGGGTCCAGCTGCGGGGGTACGAACCCCTTGGGGGCCTCCGCCGTCGC
CGCCGCCGCGGACTCCTCCGCCGCCGCCCGGAGAGGGGCCGGCCCGCGGTTGGAGGACGACGGGATGAACGCCTGCTGGGAGGCCCGCGGCGCCTTGGCC
GGCGACCAGGCGGCGGCCAGAAGGTGGCGCGTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGCGGATGGGGATCGGCGGAGCTGGAGCTGCTGGAGCA
AGATGAGAGGATGTTGAGCAAGTAGTGG