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Detailed information on CNT30579356


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 2e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522550Echinochloa crusgalliSetaria italica47.886.5596.6412forward
CNT30376473Echinochloa crusgalliArabidopsis thaliana28.7735.3378.63248forward
CNT30710271Echinochloa crusgalliGlycine max31.5554.6282.72272forward
CNT3089114Echinochloa crusgalliVigna radiata31.7928.4880.66274forward
CNT30971Echinochloa crusgalliZea mays34.6952.4693.65299forward
CNT30361778Echinochloa crusgalliSorghum bicolor47.6856.1590.02411forward

Expression of CNT30579356

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SVWASNDQSPKLNQHVHIIPCSSSRITKKVKLHIDPPSNHPTTPSSAAN*

>peptide 2 (73 aa)
MGDGVLGSSCGGTNPLGASAVAAAADSSAAARRGAGPRLEDDGMNACWEACVAMAMADGDRRSWSCWSKMRGC*

>peptide 3 (35 aa)
MGLTFLPMLRKFWPTPCLPALTFSGYCTSPLGKTR*

Sequence

>CNT30579356
AGCGTGTGGGCATCTAACGACCAGTCACCAAAATTAAATCAACATGTACATATAATTCCATGTAGCAGCTCCAGAATCACCAAGAAAGTAAAATTACATA
TCGACCCTCCATCAAACCACCCAACAACACCATCATCAGCAGCTAATTAATTAACGATCGGATTGCGCGCGCGGGACGATCGACGACGAGATGAAGATTG
ATTCTTAGAGGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCCACGCCCTGCCTGCC
GGCGTTGACCTTCTCCGGGTACTGCACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGCAGCCTGGTGCCCAGCGCC
AGGCACTGCTCCTTGCGCGCCAGCTTCAGCAGGTTGGGCCCCTCCCGCATGATGGCGGCGCCGCCCGTCGGCATCTCGAACACCTGCTCCTTGGGGGAGC
TCCACGTGATCACGTAGAACTCCTCCACCTGCGCCTTGCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGCGACGGGGTGTTGGGGTCCAGCTGCGG
GGGTACGAACCCCTTGGGGGCCTCCGCCGTCGCCGCCGCCGCGGACTCCTCCGCCGCCGCCCGGAGAGGGGCCGGCCCGCGGTTGGAGGACGACGGGATG
AACGCCTGCTGGGAGGCTTGCGTGGCCATGGCCATGGCGGATGGGGATCGGCGGAGCTGGAGCTGCTGGAGCAAGATGAGAGGATGTTGAGCAAGTAGTG
GAGGGCGCGGCGGTGGCACGGAGCTAAGAGGTGAAGCTCTGGTTTGGGTGGCTGGTTTGGGT