Detailed information on CNT30579352


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94CS9|TIP12_ORYSJ, E-value = 8e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374560Echinochloa crusgalliArabidopsis thaliana16.2421.282.3113forward
CNT30712567Echinochloa crusgalliGlycine max11.2121.9787.1878forward
CNT30223741Echinochloa crusgalliHordeum vulgare15.5227.6985.19108forward
CNT3084543Echinochloa crusgalliVigna radiata14.6626.9187.25102forward
CNT30242094Echinochloa crusgalliAvena sativa24.8647.0193.64173forward
CNT30229564Echinochloa crusgalliAnanas comosus24.5724.8984.8171forward

Expression of CNT30579352

Peptides detected in this lncRNA

>peptide 1 (54 aa)
SKCTNFTEARSNSRRLQCSKLIDRSKPHAIASGAAAESGCYISWRSMRCNAMQN*

>peptide 2 (72 aa)
MDAPMLAPTMKPMAMGAMPEPWPAKTKMRVEMNSANAALRAPGWYTSWWLPTAMLRIGIFAALELALDLTQL*

>peptide 3 (85 aa)
QMHKFYRSKIEFTAVTVFQTDRSKQTTCDCERRSSRVWVLHFMAVDAMQCNAKLNGGLDDNQTDGVEPASAAAEKVPEPLAELAQ*

>peptide 4 (32 aa)
MRLRAAQQQSLGVTFHGGRCDAMQCKTKRRTG*

>peptide 5 (39 aa)
MIIKRTELNRLLLRRRRYRSLWQSSLSSRWWGAARGCWR*

Sequence

>CNT30579352
AGCAAATGCACAAATTTTACAGAAGCAAGATCGAATTCACGGCGGTTACAGTGTTCCAAACTGATCGATCGAAGCAAACCACATGCGATTGCGAGCGGCG
CAGCAGCAGAGTCTGGGTGTTACATTTCATGGCGGTCGATGCGATGCAATGCAATGCAAAACTAAACGGCGGACTGGATGATAATCAAACGGACGGAGTT
GAACCGGCTTCTGCTGCGGCGGAGAAGGTACCGGAGCCTCTGGCAGAGCTCGCTCAGTAGTCGGTGGTGGGGAGCTGCTCGTGGGTGCTGGAGATGAAGA
GCACCTCGTAGATGACGCCGGCGAGGCCGCCGCCGATGAGCGGGCCGACCCAGTAGACCCACTGGTACCCCCACTCCCAGCTGACGAGGGCGGGGCCGAA
GGACACGGCGGGGTTCATGGACGCGCCGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGGGCCATGCCGGAGCCCTGGCCGGCGAAGACGAAGATG
AGGGTGGAGATGAACTCAGCGAACGCCGCCTTGAGGGCACCCGGGTGGTACACCTCCTGGTGGCTCCCGACGGCGATGTTACGGATCGGCATTTTCGCGG
CCCTCGAGCTAGCTCTCGATCTCACTCAGCTCTAACCACAGCTAGGATCGAGGAGACTGTGCTTGGAGCTCGATGCGATGCGATGCGGTGGTGGTG