« Back to Echinochloa crusgalli search


Detailed information on CNT30579178


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 6e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Echinochloa crusgalliOryza sativa17.2223.8194.79211forward
CNT30678417Echinochloa crusgalliSetaria viridis12.5746.6785.06154forward
CNT30639906Echinochloa crusgalliNymphaea colorata24.921.2783.61305forward
CNT3042646Echinochloa crusgalliPrunus dulcis13.7128.9787.5168forward
CNT30589303Echinochloa crusgalliMusa acuminata24.4940.8786.33300forward
CNT3067156Echinochloa crusgalliLeersia perrieri15.6771.3892.71192forward
CNT30683374Echinochloa crusgalliTriticum urartu31.0282.2591.84380forward
CNT30361799Echinochloa crusgalliSorghum bicolor24.4131.3795.65299forward
CNT30596039Echinochloa crusgalliOryza meridionalis11.3553.0597.12139forward
CNT30147849Echinochloa crusgalliBrachypodium distachyon8.0822.4589.999forward
CNT30116140Echinochloa crusgalliOryza nivara25.9641.2595.6318forward
CNT30603857Echinochloa crusgalliOryza punctata16.4123.193.53201forward

Expression of CNT30579178

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LVIFIIVIFLVKGKEMKAQISYNSCSTSSKPSC*

>peptide 2 (33 aa)
MVNFVISDKYECVTIRWAMHVVDNHLPPRLFFV*

>peptide 3 (37 aa)
MCDDKMGHACRGQPSTTTPFFCLNFLLRDLSKTQLCT*

>peptide 4 (30 aa)
MSWTTIYHHAFFLFEFSSPGLIQNPIMHVT*

>peptide 5 (29 aa)
MPIMAETEWPTKAQRGMRSASRMASRSST*

Sequence

>CNT30579178
CTGGTAATCTTTATTATTGTTATTTTTTTGGTAAAGGGTAAGGAAATGAAGGCACAAATCAGCTACAATTCTTGTTCCACGAGTAGTAAACCAAGTTGTT
GATTGTGGCAACACGTCTCAACCAGGGCCATGATAGCATGATAGGCACTTCTGATTTCTGAACTGGGGAGCACCACACCTGTACTGAACTACTGATTTGG
GCAGGCTATTAGGATACGGTTAGATGGCATGGTCAACTTCGTTATCAGCGATAAATACGAATGTGTGACGATAAGATGGGCCATGCATGTCGTGGACAAC
CATCTACCACCACGCCTTTTTTTTGTTTGAATTTTCTTCTCCGGGACTTATCCAAAACCCAATTATGCACGTAACATAATGATTCCAAGCAATCGATAAC
ATTAGCCGCTTACTTAGGTCAGGAGATCCGCCGGGACACCGGCTGATCCCAATCTCATAGCAGTAAAAAAAAATTACAGCTAACTCTTGGCTTAGCTTTG
CAGCTGCAGATAGGGACAAGGCAGGAGAAGCTGAAACAAACTCGTGCACCGTCTCGAGTACTCGCCACTTGGCGCGATCAGGCCCACTTATCTGTCCTTC
CGTGCAGGTGCAGTGCAGTGCAGGAGAGGCAAGATGCGGAGTACCACCGCTCCAGTAAAAAGTTACTGGTAAAAAAAATCGGGCACCAGAGAACAAGTTC
TACTGCGGTCATTGCACACACAGCACCGGCGCGAGCCGCGCCATTTTTGATTCCTGGGCAAGGGTAAAATCGAGGCGGTAAAAATACCGATCGCCGGCAG
GGCGCTTGGCCGGCGTGCTGCTAGAACCGGGCGAGCGCGCGGCGGAGCACCTGGGCGAGGAGGGCGGGGGCGAGGATGCCGATCATGGCGGAGACGGAGT
GGCCGACGAAGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGATGGCGAGCAGGTCGTCGACGTAGGAGTCGAGCGTGTCGTAGCGGCGGAAGTCGAAGTG
CTCCGGGTTGACGCTGCCGGCGCAGACGAGGTCGTAGAGCACCACGCGGTGGTCGCGGGTGAGGTAGGGGAGCACGCGGCTCCACGCCGACTGGTCCGTC
CCGAACCCGTGGGACAGCACCACCACGCGGTCGCCGTTGCCCACCACCCGCACGTTCAGGATCTGCAGCAGCTTCGCCCCGCTCGGGGCGCCGCTGCCCG
CCGCGCCGCCGCCGCCGCTCCCGAC