« Back to Echinochloa crusgalli search


Detailed information on CNT30579144


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 8e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30498755Echinochloa crusgalliDigitaria exilis36.0643.2691.5247forward

Expression of CNT30579144

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGPFPVTMACTKNPNMENMARRPFLSSLTLSSAAVSGSSARPSGSKAPPG*

>peptide 2 (48 aa)
MSTTWQAQMARMLCACTRLGLPRKLVVWWSADAAIFSLFGGELSTTVRL

Sequence

>CNT30579144
GGTTCACTCACGAATGTTACACGTACCATTGATTCATCATCAGCTGACATAAGCATCCGTGCCTAGTTTCCAATCTCACACCACACGTACAGGTACAGGC
AGCTGCTGATCTGGTCACTGGTCAGCACAGAGAGCATACGCCGGCGCGTGCAAAACTACTACACGCCTACTGCAACAAAGCAGAGTAGAGTACACAGGGC
CACAGGGGCATGGCTCGAGCTCGCCGTCGCCGGAGCTAGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCACGCGTTGTTGGCGACCGGGTCC
GCGACGTGGTCGAAGAGGTTCTCGATGGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGA
GCTCCTTGACCTTGAGCTCGGCGGCGGTGTCCGGGTCGTCGGCGAGGCCCAGCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGGCCCTCGCCGAG
CGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTG
CCCAGGAAGCTGGTGGTCTGGTGGAGCGCCGACGCGGCCATCTTCTCGCTCTTCGGCGGTGAGCTGAGCACGACAGTGAGATTGG