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Detailed information on CNT30579138


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30362117Echinochloa crusgalliSorghum bicolor4.5920.6598.0451forward
CNT30369796Echinochloa crusgalliOryza glumipatula12.0528.9493.28134forward

Expression of CNT30579138

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MINANISNVALQFLINAIEWKAWASKGARTLDSISIN*

>peptide 2 (36 aa)
MMVSLSLPSSSLGMMSWSASISSWAAAASTSSAMVM*

>peptide 3 (36 aa)
MAAAGIAAAAAAILFFSSTACLVGWNGREMTSKHNS*

>peptide 4 (35 aa)
EIKVPKSRITHSSILAFRGRKQRHCGIVLLKGRHT*

Sequence

>CNT30579138
TGAAATTAAGGTCCCAAAGTCCAGAATCACGCACTCTTCCATCCTTGCTTTCAGGGGCAGAAAACAGCGTCACTGTGGCATAGTATTACTGAAAGGAAGG
CATACATGATAAATGCAAACATATCAAATGTGGCTCTTCAATTCCTAATAAACGCAATCGAATGGAAGGCGTGGGCAAGCAAAGGAGCAAGAACATTGGA
TTCTATTTCTATTAACTGATCATCAAGTGACAACCCGGCGACGACTAGCATGTCAAATTGCAGGAGAGTTGTTAAACCATGAGACAGGTAGCAGCGTAGG
AGTAATATTTTGATTTAGCAAGCAAGCAAATTAAAGCAAGCGAAAGCAGCAGCGAGGGGGGCGGTCGGCTCGGCTAGTTGTTGTCGCCACGGCGCGCGTA
GGACGGCTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTTGTTGTTCTTGTGCGGCTGTTGGTAGGATGATGGTCTCCTTGTCGTTGCCGTCATCG
TCCTTGGGGATGATGAGCTGGTCCGCCTCGATCTCGTCTTGGGCGGCGGCGGCATCAACATCATCCGCCATGGTGATGTAGTCTTTGGGCGTGGTGTGGT
GGTGGTCCGTCTCCTTCTCCTTGATCTTGCGGAGCTTGCGCTTGATGATGGAGGCGGCCAGGTCGATGCTGGCGTAGGTGGACTCGGCGTCCTCCTCGGC
GCGGAGGACGCCGTGGCGCTTGCTGAAGAGGGTGATCTCGCAGCGGGAGGCGCACCGAGGAGAGCGGCCCATCCCACGCCATCCGCACCGACACCACGCC
TCCACCTCCACCGGCGACCGTCTGCCGCCGCGCTGGCGCCTCCACGGCCAGCGCGCGGCCCAGGAACCCCGACCGGAGGGCCCTCGACCTCGAACCGCCT
CCGATTCCCCCACACGAGGAGGAAGAAGACGCCGACCTGGGAGCCAGCGACACACGACAGGTGATGGCTGCGGCGGGAATTGCAGCTGCGGCGGCCGCCA
TTCTTTTCTTTTCTTCGACTGCCTGTCTCGTCGGATGGAATGGAAGAGAGATGACCAGCAAGCACAACAGCTAGATGGATGGATGAACAAGCAGGAAGGG
AGGGAGGATTCC