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Detailed information on CNT30579131


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y0F2|NRX12_ORYSJ, E-value = 9e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691748Echinochloa crusgalliOryza sativa87.245.8983.42368forward

Expression of CNT30579131

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLINYVRNIVVQCLPIRANQNKCRKSTKLKVANQLLTYLVTLRNCKPGHLCKTLLK*

>peptide 2 (81 aa)
TFAPSFRMTKSKSPLIRRDSKVCDAALAFAFSARGSSFSALKGKPSHASKPCSSIMSATLLFSVFPSGPIRTSVGRVLSSK*

Sequence

>CNT30579131
ACCTTTGCTCCATCTTTTCGAATGACAAAATCCAAATCACCACTGATTAGAAGGGACTCCAAGGTTTGTGATGCTGCTTTAGCCTTTGCCTTCTCAGCAA
GAGGTTCCAGTTTCTCAGCACTGAAGGGGAAGCCCTCCCATGCCTCAAAACCATGCTCATCAATTATGTCCGCAACATTGTTGTTCAGTGTCTTCCCATC
AGGGCCAATCAGAACAAGTGTAGGAAGAGTACTAAGCTCAAAGTAGCGAACCAGCTTCTCACATATCTTGTCACCTTGAGGAATTGCAAGCCAGGGCATC
TTTGCAAAACTCTCCTTAAATGATGATTCCTCGCTGTCCAAAGATACAGCCACAACTTCAAATTTCTGGCCCGTTTCTTTGAGTTTATCATAGATCTTGG
CAAGCACAGCAATGAATTCATC