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Detailed information on CNT30579095


BLAST search results

BLAST vs Swiss-Prot:
sp|P19954|PRSP1_SPIOL, E-value = 1e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30444291Echinochloa crusgalliSaccharum spontaneum30.9520.9187.68203forward
CNT30595873Echinochloa crusgalliOryza meridionalis26.073884.8171forward
CNT30575883Echinochloa crusgalliOryza barthii31.411.7483.98206forward
CNT30558870Echinochloa crusgalliPanicum hallii19.5124.5292.97128forward

Expression of CNT30579095

Peptides detected in this lncRNA

>peptide 1 (47 aa)
ISSYQFCEAGSGCLIRHNCGIVVVVVVKGRRDIHTYAYMIISKKCGS*

Sequence

>CNT30579095
ATATCGTCCTACCAATTCTGTGAAGCAGGATCTGGTTGTTTAATTCGCCATAACTGTGGCATAGTAGTAGTAGTAGTAGTGAAAGGAAGAAGAGACATAC
ATACATATGCATACATGATAATATCAAAGAAATGTGGCTCTTGAATTCCTAATAAACGCAATCAGCAACATGAGACGTAGCAAGCGAAAGCAGCGAGGTG
GGCTAGTTGTTGTGGCCACGGCGCAGGGCGGCGTAGGACGGGTGTTCTGCTGCTGATGCTGATTCTAGTATGATGGTCTCCTTGTCGTTGCCGTCATCGT
CCTTGGGGATGATGAGGCCGTAGCCGCCCTCCTTCCTCTTGTAGAGGATGTTGACCTCGCCGGTGTCCTCGTTCCTGAAGGCGTAGAAGTCGTGGTCGAC
GTTCTGGAGCTGCTGCAGCGCCTCGTCCACGCCCAGCGGCGGCATCTCGAACACCTTGGTGCGCACCACCTTGGCGAGCACCGTGTCCTCGTCCTCGGCG
CCGACGAGGGTGATCTCGCAGCGGGAGGTCTTGGGGCCCCTGCCAAGCTCGCCGCCGCGGGCCGACAGCCGGACGTCGACCTCGCGGACAAGGTGGCAGT
GCTTGGACACGGCACGCCCCACCTTGTCCTCGATGTGCTCCTTCACATTATCAGGC