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Detailed information on CNT3057903


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Amborella trichopodaOryza sativa18.2891.0692.47438reverse complement
CNT30671914Amborella trichopodaSetaria viridis28.5941.1992.7685reverse complement
CNT30524649Amborella trichopodaSetaria italica47.9134.8391.991148reverse complement
CNT30640799Amborella trichopodaNymphaea colorata32.39101.9785.95776reverse complement
CNT30619000Amborella trichopodaSesamum indicum48.9638.491.391173reverse complement
CNT30730372Amborella trichopodaCorchorus capsularis48.9660.6292.581173reverse complement
CNT30632407Amborella trichopodaVigna unguiculata49.0443.592.771175forward
CNT30490123Amborella trichopodaOlea europaea34.2247.192.93820reverse complement
CNT30505430Amborella trichopodaNicotiana attenuata48.7549.7793.241168reverse complement
CNT30712870Amborella trichopodaGlycine max30.1843.592.67723reverse complement
CNT30157603Amborella trichopodaPistacia vera31.0577.9989.11744reverse complement
CNT3092080Amborella trichopodaSolanum tuberosum11.444795.99274reverse complement
CNT30300122Amborella trichopodaTriticum aestivum47.8753.1891.81147reverse complement
CNT30221907Amborella trichopodaHordeum vulgare47.795.1791.081143reverse complement
CNT30387090Amborella trichopodaTriticum turgidum47.8740.7691.891147reverse complement
CNT30592527Amborella trichopodaMusa acuminata7.8956.5996.83189reverse complement
CNT30543268Amborella trichopodaBrassica napus48.550.6391.911162reverse complement
CNT30234026Amborella trichopodaBrassica oleracea13.7382.8790.58329forward
CNT30147386Amborella trichopodaMedicago truncatula39.9862.1392.8958reverse complement
CNT30435868Amborella trichopodaAegilops tauschii46.6280.1391.761117reverse complement
CNT30242786Amborella trichopodaAvena sativa24.2567.0992.08581reverse complement
CNT30670388Amborella trichopodaTriticum dicoccoides47.8740.9191.631147reverse complement
CNT3082633Amborella trichopodaBrassica juncea13.0695.1491.37313reverse complement
CNT30140120Amborella trichopodaLolium perenne47.8734.5492.071147reverse complement
CNT30605266Amborella trichopodaGossypium raimondii32.0536.6993.23768reverse complement
CNT30216578Amborella trichopodaKalanchoe fedtschenkoi49.2935.4592.721181reverse complement
CNT30655407Amborella trichopodaRosa chinensis48.4634.7393.281161reverse complement
CNT30207637Amborella trichopodaHelianthus annuus4960.0291.651174reverse complement
CNT30628241Amborella trichopodaDaucus carota48.9143.4193.171172forward
CNT30689137Amborella trichopodaTriticum urartu43.5386.791.081043reverse complement
CNT30595572Amborella trichopodaOryza meridionalis11.1431.1693.63267reverse complement
CNT30360996Amborella trichopodaLactuca sativa4980.4792.931174reverse complement
CNT30434643Amborella trichopodaPapaver somniferum31.26100.6791.05749reverse complement
CNT30571858Amborella trichopodaVitis vinifera49.1233.9692.951177forward
CNT30108930Amborella trichopodaOryza longistaminata47.4548.5991.911137reverse complement
CNT3038420Amborella trichopodaCucumis melo28.2147.3493.2676reverse complement
CNT30331546Amborella trichopodaDioscorea rotundata17.95103.1287.44430forward
CNT30113381Amborella trichopodaFicus carica18.6110090.58446forward

Expression of CNT3057903

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGMNLQGYHILWPDLPTFSQFPNQRFFHHPIHNKSNETNENELHELNRSL*

>peptide 2 (48 aa)
MPYSLSKQIWISVESHSLSTKIVPHLLFVLTSTKICDPPSLSLHAIKI*

>peptide 3 (30 aa)
MPNLKYKSSPHSKFKTKFKFQNQDHALLSL*

>peptide 4 (35 aa)
MQSKYRILQLFSLLQKQQRIDLMVIDSIAAGFLWL*

Sequence

>CNT3057903
GCAGTTAGTATACGGACGCCTCCGTAGGTGTGGTAGACGTATGGTGCCCTTCAAATTTTATCATGGTATATAATTTTGATGTAAAATGTTATTAGGATTA
TCTCAAAATCTATTTCTATATCTAATTATAAAATTTTAAATTTCAAAAATGGTTAAAATCAAGTAGATCTATAAACACATGAAAATCTTGACAATGAATG
GTGTAGATAATATATTGTAAAATGCACACTTTATGAGACTTAAAAACCTTTTTATTTTTCATAGTCATACATCTTGATGTCGAGATGATCAATCAAAGGG
TTTTTCAACATTAAAACTACCTTTTTCGATGGATTTTTGAAGGGCATCCGTAGTTCTACATTATAAGGTAGCATCCTTATATAAACTTTTTCCTATATAT
ATAGGGTTTTTCTAGAATTCACCATACTAATGGTGATTTTAGAATACCCTACTTCAACATTCTTGACAATATGTTACCCCTATATTGTTTAAAATTACAC
TAGTTTCCTTATTCGAATCAAATTTTTGGAGGGCATTAGTAGTAATTATAAATGATGCTCAAATTTCAAAATCAAAATGCCAAATTTGAAATACAAGTCA
AGCCCACATTCAAAATTCAAAACCAAATTTAAATTTCAAAACCAAGATCATGCCCTACTCTCTCTCTAAACAAATTTGGATCAGCGTGGAGTCTCATTCT
CTCTCAACCAAGATCGTGCCTCACCTTCTCTTTGTGCTAACATCAACCAAGATTTGTGACCCACCTTCTCTCTCGCTTCATGCAATCAAAATATAGAATT
TTGCAGTTGTTTTCTCTGCTGCAAAAACAACAGAGAATTGATCTTATGGTGATAGATTCGATTGCAGCTGGTTTCCTTTGGCTGTAGTTGGTGACTACAG
GACACTACTGGTTGGTTTGATAGCTGGAGAGAGTAATCAGCAAGGGGTTGGTTTCAACATCAACGTTAGAGGCAAGAGAAAGCGAGAGAGAAAGAGATAA
CAGGTTCAAAGCAACTTCGTCACTCTCGTGTACCCATCGGACGGCAGCCCTTTTGGGGCTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACG
CATAAAGCCTTGAACTGGAAAGCGATCGTGTCTTTCACAGGATTTCTTGTTACTCAAGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTAACCAAA
AACCTTCCCCGATTGACAGAACGTCCCACTACTGACACTTGAAAATGCTTTCAAGGTCTCGTTGCTTCGGTGAATCACTTGGGCCTTGATACATTTTCGG
TGCCATGGAGCTAGATCAGTGAGCTATTACGCTTTCTTCAAAGGATGACTGCTTCCCAACCCACCTCCTGATTGTCATCGCTCGATCATTTCCTTTTCCA
CTAAGAGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTTTGGATCTTAACACCCAAAGTGTCTGTCTATACAAGCGATCTAGG
CCTGTCTTCGGAGTTTCCCTGGGGTTGGTCAAGCTTTTTGGGGGCCACTCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTG
AAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCATATTTTGCCACATACGTGGGTTCGGTC
CTCCAAGGCCTATTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTCAAATAGGAACAATTGGAAGATTCAACCTTTGGAAAGCGC
CTACACCTAATGGCTTAAGCCGAGTTCCCATTTCCTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGCGCTCGTCGTTTGGCTCTAAGCT
CTGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACAGTACTTGTACGCTAT
CGGTCATTGAGGAAGACTTAGGCTTAGAGGGTGGTCCCCCTTTCTCGCGTAAAAGCGATCAAAATTTGAACACGTCGCGTTTTACTGGGAAGGATAGAAC
CATGGGAATGAATCTACAGGGCTATCACATTCTTTGGCCAGATCTTCCTACCTTTTCACAATTCCCGAACCAACGGTTTTTCCATCATCCAATCCACAAC
AAATCGAATGAAACCAACGAGAACGAGTTACACGAGCTTAATAGGAGCCTATGAAAACTAGTTTGTTAGGCTGATCGAGAACGAGTTACGTTTAAACAAG
TGCAATTCTACGAAACGAGCCTAATAGGAAAGGAAGCGAAGTGCATAAGCACTGAGCGTGCCATGAGCGAAGCAAGAGGAACGAGGCTAAGCGGCT