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Detailed information on CNT30578993


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30558853Echinochloa crusgalliPanicum hallii29.2645.5393.87163forward

Expression of CNT30578993

Peptides detected in this lncRNA

>peptide 1 (68 aa)
GQIKSIQCTEICEQKPCSLFSHFIHCGNNSRTIANSNIHPSRGNQHLIERVTRDTKLRGNSDRTVTRC*

>peptide 2 (35 aa)
ANQINSVHRDMRTKTLLTLFSFHSLRKQLTNHSEQ*

>peptide 3 (32 aa)
GKSNQFSAQRYANKNLAHSFLISFIAETTHEP*

>peptide 4 (30 aa)
MLEGLVVGGPGEAADEAAVLHVRRRHLPSH*

Sequence

>CNT30578993
GGGCAAATCAAATCAATTCAGTGCACAGAGATATGCGAACAAAAACCTTGCTCACTCTTTTCTCATTTCATTCATTGCGGAAACAACTCACGAACCATAG
CGAACAGTAACATTCATCCATCACGGGGGAACCAACACCTAATCGAACGGGTAACACGGGACACTAAACTCAGGGGTAACTCGGACCGAACGGTAACACG
ATGCTAATAGATAGCTAGGATAACTTGGCCGCCGCCACGGGAGGGCCCACCCTTCAGTTCCTCCAGTTGCCACCGGAGTCACCGCGGCTGCCCCCGTAGC
CACCACCACCGTAGCCGCCCTCACGGCGACCGCCGCCGCCGTAGCCGCCGCCACCTCCTCCATAGCCGCCGCCGCCGATCTGGCCGTAGGAGGAGAAGGC
ATGCTCGAGGGACTCGTTGTTGGTGGCCCAGGCGAGGCCGCCGACGAAGCAGCGGTACTCCACGTCCGCCGCCGCCATCTTCCTTCCCACTAAAACCCTA
GAACCGAGGACTTTGTAAGAGGGGGAGGAGAAGCCAACCCGCCTCGAGAGAGCACGG