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Detailed information on CNT30578976


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440859Echinochloa crusgalliAegilops tauschii6.6123.4689.2984forward
CNT30452760Echinochloa crusgalliSaccharum spontaneum8.8940.7988.5113forward
CNT30687812Echinochloa crusgalliTriticum urartu6.6137.8489.2984forward

Expression of CNT30578976

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSTQIWSQGCRHHSARSTALDRRRRHSARRRCRRKP*

>peptide 2 (53 aa)
MGLAAVIPAPAQAYSEALRRQRDGLGGGRSAGGSAVGRRGGRGLGRKEQGVLG*

>peptide 3 (68 aa)
GICIATSLRENKREHKRQDIKKLYQNRLLIRLNLRFHTITKQDIDYEKGFLETTPPTRKQHANETSLP*

>peptide 4 (29 aa)
MDWEEEGAPVVQRSGDAGVGGSGGRSKGC*

Sequence

>CNT30578976
CCGGTATCTGCATAGCTACCAGTCTAAGAGAAAATAAAAGAGAACATAAACGACAAGACATAAAAAAATTATATCAAAACAGACTACTCATACGACTTAA
CCTTCGATTTCATACCATAACAAAGCAGGATATAGACTACGAGAAAGGCTTTCTAGAAACAACGCCTCCAACAAGGAAACAACACGCGAACGAGACATCG
TTGCCATGATCCAATCAGTTAAGATTAGATAATCGATTTTCACCGTAGGGAGCAATTTATCGAGCTCTAAACAATACTTCACCAAGACCATTGTCAGGTA
CAACCAACTAAGGATAGACCTGAGGATTTCTCCCTGGAGTCGAGAAATCTGAACCAAAAAAGGTATCACCAATTCGACGCCCATCGATGCTACTTCCACT
ATCTTACTGAGCCAATACCCCCATACTACCCAATCTTGACCAACAACGATCGGCCATTAACTCATGCTATCCCACGATGACTTTACCACGAAGTAACCAA
TAGGCACACGCACAACGTCCGCAAGATCCATCAATTGATGGGAAGCATCAGCGGAGTAAAAGATCCGTGGGTCGAAACCAAGATGACTAATCTCTGAAAT
TGTAAAGATTGTATTAGTTATGAATGAAGATTTTGTCGTAAGATATAGAGGTACAAATACTGCCACCGAATCAACTAAGATGGACATGGATGCGCCGGGC
TAGCTGATGTCCACTCAGATCTGGTCCCAAGGTTGCCGCCACCACAGCGCCAGATCAACAGCCCTGGACCGCCGCCGCCGTCACAGTGCACGGCGTCGCT
GCCGTAGGAAGCCATAGATGAAGAAATAATGGGCCTCGCTGCCGTCATCCCCGCGCCCGCCCAAGCTTACAGTGAGGCACTCCGGCGGCAGCGAGATGGA
TTGGGAGGAGGAAGGAGCGCCGGTGGTTCAGCGGTCGGGCGACGCGGGGGTCGGGGGCTCGGGAGGAAGGAGCAAGGGGTGTTAGGTTGATCTCTTAGTC
CACACGGCCCAAAGGCCGTGGGCCTTGATCCGCGCACTGATCGGGGGCGCCCAACCCAACCCATGGTTGGTGGGCCCCTGTCACCCTGCGCTATAAAGAG
AGGTGGGGGCCGCCGGCTCTACTCACGAGGTTGAACTCGAGTCGTCAGGCCCACCGACATACCAATCCGATCTAGGGTTAGCGCAGCCAGTGACGGGAAG
CTCCGCCACCGCCGCGACGACGTCGGCGCCGTCATCTACCGCCGTTCCAGGCCAAAGCCGTTGGCGACCAG