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Detailed information on CNT30578612


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y205|RBS1_ORYSI, E-value = 5e-92

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672821Oryza barthiiSetaria viridis25.9938.7485.03294forward
CNT30521106Oryza barthiiSetaria italica25.9940.5585.03294forward
CNT30290030Oryza barthiiTriticum aestivum27.3261.3186.41309forward
CNT30221752Oryza barthiiHordeum vulgare27.0645.7487.58306forward
CNT30386515Oryza barthiiTriticum turgidum27.3222.3386.41309forward
CNT30555612Oryza barthiiOryza glaberrima60.2165.17100681forward
CNT30436411Oryza barthiiAegilops tauschii27.0646.4386.93306forward
CNT30248284Oryza barthiiAvena sativa27.0640.7586.6306forward
CNT30658325Oryza barthiiTriticum dicoccoides27.3242.886.73309forward
CNT30136970Oryza barthiiLolium perenne27.0647.8985.29306forward
CNT30681645Oryza barthiiTriticum urartu27.0620.9286.6306forward
CNT30720492Oryza barthiiTriticum spelta24.9356.0686.52282forward
CNT30351770Oryza barthiiEragrostis tef25.9930.1286.05294forward
CNT30597241Oryza barthiiOryza meridionalis42.3554.9997.91479forward
CNT30150944Oryza barthiiBrachypodium distachyon26.1744.3188.85296forward
CNT30551876Oryza barthiiOryza brachyantha26.4434.7795.65299forward

Expression of CNT30578612

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MHLILPPLLTLPKLELPERRAMGMPAVDLSPWKGATVVADDAITEGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

>peptide 2 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 3 (49 aa)
MAAALASRGGRGCGRIGRRARAYPRAFVAGSRARGGVAPGSWVVAVVASR

>peptide 4 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

Sequence

>CNT30578612
AGAAAGGCATTTCCGATGAACAACAGAAGCATGATTTTTTAATTCCATGATCAAATTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGAT
TCACATCCATCTCATACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGAT
ACCACTCTTACATCAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACAC
GAAACAAGGTGGGAGACATCATCGAATCAGAGATGAACAATTAAACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGG
GGGCTTGTAGGCGATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCG
AGCTCCTTGAGCACCTGGGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCGTCGTAGTATCCGGGGGACCTGTGGTTCT
CACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTAATTAC
CTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGATGGGCATGCCGGCGGTGGACTTGAGCCCCTGG
AAGGGAGCGACGGTGGTGGCCGACGACGCCATCACGGAGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTACTTCTTGAGATGC
ACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAGCCAAAACTCAGCGGTCTCACCCTCCCTAGCTAGCTAATCGGATGGCAGCGGCGCTCGCGAG
CCGCGGAGGCCGGGGATGTGGTAGGATTGGCCGGCGTGCGCGCGCCTATCCGCGGGCGTTTGTGGCTGGCTCACGCGCGCGCGGTGGTGTCGCGCCGGGC
TCGTGGGTTGTGGCCGTGGTGGCATCTCGAC