Detailed information on CNT30578602


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002534, E-value = 1e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3068536Oryza barthiiLeersia perrieri53.8247.3594.03134forward
CNT30371460Oryza barthiiOryza glumipatula54.6254.4100136forward
CNT30104694Oryza barthiiOryza rufipogon54.6252.71100136forward

Expression of CNT30578602

Peptides detected in this lncRNA

>peptide 1 (39 aa)
KNQHHVNLKIIIPYIQESESGRPLASHPTCKQLNNHTSR*

>peptide 2 (42 aa)
MILLGNKRGKNEKTLKGKKVAGRANAFTAIYTSKANVVEGGGV

Sequence

>CNT30578602
ACAAGAATCAGCACCATGTTAATTTAAAGATTATAATTCCATACATACAAGAATCAGAATCAGGCAGACCTCTTGCATCTCACCCTACTTGTAAACAACT
AAACAACCATACAAGCCGATGATCTTGCTAGGCAACAAAAGGGGAAAAAATGAGAAAACTCTAAAAGGAAAAAAGGTTGCTGGGAGAGCAAATGCATTCA
CAGCTATTTACACCTCAAAAGCAAATGTTGTTGAGGGAGGAGGGGTCAG