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Detailed information on CNT30578598


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697878Oryza barthiiOryza sativa1007599.82543forward
CNT30104316Oryza barthiiOryza rufipogon10097.1498.34543forward
CNT30118094Oryza barthiiOryza nivara92.6310098.21503forward

Expression of CNT30578598

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSIRVPMNFSLSPSPINEDGSMHISLRILNSCFLSARSTPARF*

>peptide 2 (96 aa)
MSIKEPMNLSLSPSPIAEDVSMNILLRILMACFFSTESHWSHSRILSKVPIALLLVDISCHRILFDFVGPYINRINRLSIFTPSSAIRDHSLCCFL*

Sequence

>CNT30578598
ACCAGATCATCACCTGCTAGTTTTTCAAACAAGTCGCCCTTGCTGTTGTGAAGAAACATGTCCATCAGGGTGCCGATGAATTTTTCTCTGTCACCTTCGC
CCATAAACGAAGATGGATCCATGCATATTTCTTTGAGAATACTTAACTCTTGTTTCTTGAGCGCCAGATCTACACCTGCCAGATTTTGAAAGTCACCATT
ACTGTTGTGAAGAGACATGTCCATCAAGGAGCCAATGAACCTTTCTCTGTCTCCTTCACCCATAGCCGAAGATGTATCCATGAATATCCTTTTGAGAATC
CTTATGGCGTGTTTCTTCAGCACAGAGTCACATTGGTCACACTCAAGAATACTCTCCAAGGTGCCGATTGCTTTGCTGCTTGTTGATATTTCATGCCACA
GAATATTGTTTGATTTTGTAGGGCCATACATAAATCGCATAAATCGGCTTAGTATCTTCACCCCGAGCTCTGCCATACGGGACCATTCGTTATGTTGTTT
TTTGTGAAGTGATCCCTTGGACGTTATAAGTGCCACAATCTTG