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Detailed information on CNT30578596

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30452352	Oryza barthii	Saccharum spontaneum	12.99	24.76	82.17	129	forward
CNT30371424	Oryza barthii	Oryza glumipatula	18.03	25.32	86.59	179	forward
CNT30106795	Oryza barthii	Oryza longistaminata	63.54	94.6	96.83	631	reverse complement
CNT30104679	Oryza barthii	Oryza rufipogon	46.63	78.61	98.27	463	forward

Expression of CNT30578596

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MLATTVRMSSGTAAATMDGWQKTTLSSPGARQCCGTGSTSLPVVLVSGHRALK*

>peptide 2 (31 aa)
MDVIYLCPNLLYYDTSYLHKITYIMGWREYV*

>peptide 3 (54 aa)
MQHMGILLLSIYNYRLIGWMCFSRLGIEWMDRLIIKHNNNILSPSHNIRNFGWT*

>peptide 4 (66 aa)
MMEREQLRFYCRIIRENRLERFGCCPADIHTKQTIFPITSIPVHVHIYCCRYIVGSRQTDIYSTWQ*

Sequence

>CNT30578596
GATTTGACTATAAGGAACTCAATTTAATCTAGTGGAATTTTACTCCCACACACCCATTTTTACTTTTTTTTTTGCTTTACCCAATACAACGCATGGGTAT
TTATGCAACACATGGGCATTTTGCTACTATCCATATATAATTACAGATTGATTGGGTGGATGTGCTTTTCACGATTGGGGATTGAATGGATGGATAGACT
AATCATAAAGCACAATAATAACATACTCTCTCCGTCTCATAATATAAGAAATTTTGGATGGACGTGATATATCTTTGTCCAAATTTATTGTACTATGATA
CTTCGTATCTACACAAAATCACCTATATTATGGGATGGAGGGAGTACGTGTGAAAGAAGAAAATGATGGAAAGAGAACAACTACGTTTTTACTGCAGGAT
AATAAGAGAAAATAGACTGGAACGCTTTGGTTGCTGTCCTGCAGACATCCATACAAAACAAACAATCTTTCCAATAACTTCCATCCCCGTTCACGTGCAT
ATCTACTGTTGTCGCTACATCGTCGGTTCGCGTCAAACAGACATATATAGTACGTGGCAATAAAAACACATCAAAGCATTTTTTTTCTTACATAAAAAAC
AAAATACGTCGTAGATTGTACACGTACAACACTAATACCAGACTGTGCCCGTCCGTACGCGTACAGTCGACATACGGTGTACACATACGTGTACGCACTG
TCATTATTATTCCCCCCTACCCACTTCTACACACAGCTAGCCCGTACACGTGGCACACGCAGGACGCGCCACGTGTGCACGACGAGGACCTCACACACAG
CTAGATGTTAGCGACGACGGTGCGGATGAGCTCCGGCACGGCGGCGGCGACCATGGACGGCTGGCAGAAGACGACCTTGAGCTCGCCGGGGGCGAGGCAG
TGCTGCGGCACGGGCTCGACGTCGCTCCCCGTCGTCCTTGTCAGCGGGCACCGCGCCTTGAAGTAGTCCGCCGTGCCCCGGCACGCCACGACG