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Detailed information on CNT30578589


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223402Oryza barthiiHordeum vulgare12.3125.5285.59111forward

Expression of CNT30578589

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LAVVIDLFVHLLVDRKDAAEKGKKSERLLYTLGRLGEQQV*

>peptide 2 (57 aa)
MLLRRERRANDFSTPLAGLESNKYETGPTSTGTVSTPSCMKNNYIGDIKATRLHLNK*

Sequence

>CNT30578589
GCTAGCAGTAGTTATAGACTTGTTTGTACACTTACTTGTAGACAGGAAGGATGCTGCTGAGAAGGGAAAGAAGAGCGAACGACTTCTCTACACCCTTGGC
AGGCTTGGAGAGCAACAAGTATGAAACTGGTCCAACAAGTACTGGCACGGTGTCAACGCCGAGCTGCATGAAGAACAATTACATAGGAGACATTAAGGCA
ACCAGATTACATCTTAATAAATAGGGCACTGTGATTTTCATTTCAGGACTACAACAAAATTCAGAATTTGATGCTTGAAACAGCAGTGCCACTATTCACA
AACTGGAACAAGATAACATATTTAATTAAAGAACTTTTCAGGTAAATTCACCAATCACCAATAAAGAATATGTGAAATTAGAAAAAAAAATATTGCCACA
GATCAACATGGGCAGCTTTTTGAAAAAAGATGAAAACAACATATAGTGCAAAAAAATTATTTCATAACCTTTAAAGTGAACTCTAGTCATAGTCAATCTG
AAAGTGCTACATTCAAAATTCTAAGCAAGGGGCCAAAATTTGTTTGGCCGTATTAATACAGCACTAAAGAAACGAACTGACTTGGTGGGCTTGTCATTTA
CAGGCCATTAATCTGTGGAAGTGACAATCTTCCAAAACATAATTTACAAGCCAGCACTTAATCTACATCAGATTCTTTTCTAAACAAAATTATTATATAA
ATGCACAACTAAGAAACAATTGATCACTACTAAAACTTGATGTTTGAATTAGCATCATAACAAAAGGCAACAAAATAAACTAATAAATAACTTTATGAAC
TAGGATATTGATGACATTAAGCAATGTGCTAGCAACATCTAGTCAGGCAGAGAAAAAAAATCATTAAGCAGACAGAGATGTAAAGATATAATTCTATTAT
CT