CANTATAdb - search

Detailed information on CNT30578587

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30555659	Oryza barthii	Oryza glaberrima	89	100	99.88	801	forward

Expression of CNT30578587

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQSCRTTRHQWSVHQQLAACQEAYCNPQRRLMMNR*

>peptide 2 (74 aa)
MSNNKTSVVSSSAAGSMSRSLLQSSTTTDDEQVTEMLLHWLLSPACAAACSSLLLLPGLWQWLSVLICDASTTT*

>peptide 3 (37 aa)
MYSSTVPFFVSCSVLSSRSATNIHSQGVLPLRSVRLR*

>peptide 4 (31 aa)
MIAIVAVGMVQVFSLLHRLCSLALLFLPVGAS

Sequence

>CNT30578587
AAAAAATTGCTCTGGTTTTCTGGTGGTTGTAGAGAGAAGTTATATGGAGACCACAAATTGTCCCTCGTTACTGGTCCCTGAATAGGGACATGCTTGCTTT
GACTCCAATGGAACGCAATCAATTGTTCCAACCGGCTGGCCAGCAGTGACCGGGATGTTTTACTCCATCAAAAACACGGCGTGACCGTGCGAGTCAAGAA
GGAACACGCCAATACCTTATGTTCAGTTTGACAGCACGCTCGGATGGATGTACTCCAGTACCGTGCCATTTTTTGTTTCCTGTAGTGTTCTGAGCAGCCG
GTCGGCGACAAACATACACAGTCAAGGTGTTCTGCCGCTTCGTTCTGTCCGCCTAAGGTAAAAACATAATGGAGCTGATTTTGAAAAGAGAACTACTGCC
GGGCGAGGATGGTCTGGATGGATGGATCAACTTTGAAAAGAAATAAGATGTGTGTTAAACATCTCATTCTTTTGCTGATGCGCTGAAACGAGGTGCATAT
GCAGTCATGTCGAACAACAAGACATCAGTGGTCAGTTCATCAGCAGCTGGCAGCATGTCAAGAAGCTTATTGCAATCCTCAACGACGACTGATGATGAAC
AGGTGACGGAGATGTTGCTGCACTGGCTGCTGTCACCGGCGTGTGCCGCAGCCTGCAGCTCGCTGCTGCTGCTGCCCGGACTCTGGCAATGGCTGTCGGT
GCTAATCTGTGATGCTTCGACGACGACATGATCATCAGCTGATGCCGCAGGGCCCTTGCAGCAGGTGTGCTGGCCGTAGTAGACCACCGTGTACATGACG
GGATGATCGCCATTGTAGCTGTTGGCATGGTGCAGGTCTTCTCGCTGCTGCACCGTCTTTGTAGCCTTGCACTTCTCTTCCTGCCTGTAGGTGCATCTGT