Detailed information on CNT30578577


BLAST search results

BLAST vs Swiss-Prot:
sp|P01053|ICI2_HORVU, E-value = 1e-18

BLAST vs NONCODE:
NONORUT002477, E-value = 9e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30286420Oryza barthiiTriticum aestivum46.9910.6981.1164forward
CNT30104461Oryza barthiiOryza rufipogon94.5657.1994.24330forward

Expression of CNT30578577

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LFIRRKKTLTRRVKHYSDGDGSIETCTVHITCVHVII*

>peptide 2 (58 aa)
MVGVPATVSTKMRTRLGRKSMVTGVPTGTTTMSASGMSLRITFFASSTGSPTTSSHDVF

>peptide 3 (47 aa)
MRMRASSSRWWGCRRRCRRRCGRGWGGSPWSPASPPEPRRCRRRACP*

Sequence

>CNT30578577
TTATTTATTCGTAGGAAAAAAACATTAACACGTAGGGTAAAACATTATTCAGATGGGGATGGATCGATCGAAACATGCACAGTACATATCACTTGCGTGC
ATGTGATTATTTAATTAAGATAAGCAAGATGCTGAAGGCAGCCAGATGAGGATGAGGGCTAGCTCTAGCCGATGGTGGGGGTGCCGGCGACGGTGTCGAC
GAAGATGCGGACGCGGTTGGGGCGGAAGTCCATGGTCACCGGCGTCCCCACCGGAACCACGACGATGTCGGCGTCGGGCATGTCCTTGAGGATCACCTTC
TTCGCCTCCTCCACCGGCAGCCCCACCACCTCCAGCCACGACGTCTTCC