Detailed information on CNT30578576


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697729Oryza barthiiOryza sativa28.7150.4396.61118reverse complement
CNT30371386Oryza barthiiOryza glumipatula47.9372.4395.43197forward

Expression of CNT30578576

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLVLLPSEASCLEGCVPSYASNRKTWNLNEITSLLN*

>peptide 2 (78 aa)
DGQSFKSLTEKRNNTIHLDMEGVYHLSCTLRHPLIHLYQLAGHLSLLPARPMILFNHTYIGLYYKHAIKRFFIWLQHT*

Sequence

>CNT30578576
TGATGGTCAAAGTTTTAAAAGTTTAACTGAAAAAAGAAACAATACAATACATTTAGATATGGAGGGAGTATATCATCTGAGTTGTACTCTGAGACATCCA
TTAATCCATTTATATCAATTAGCAGGCCATTTAAGCTTACTACCAGCTAGGCCCATGATTTTATTTAATCATACATATATAGGATTATATTACAAACACG
CTATTAAGCGGTTTTTTATTTGGTTGCAGCACACATAATTCATTCGTTCGTTCAAGCTTAATTATGCATGCTGGTCCTTTTGCCATCTGAGGCTAGCTGC
TTAGAAGGTTGCGTTCCCTCCTATGCCAGTAATAGAAAAACTTGGAACCTGAATGAAATAACATCACTACTTAATTAGTTAATAATCGGTTAAAAATGAA
ACAAACAGCGG