Detailed information on CNT30578574


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555574Oryza barthiiOryza glaberrima10063.07100415forward
CNT30111182Oryza barthiiOryza longistaminata51.8137.3992.09215forward
CNT30104723Oryza barthiiOryza rufipogon88.435090.74367forward

Expression of CNT30578574

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MDTLPHLSGQPGNEIAGSEVVVDIAIAWKTMSMRRTDASCMSCMVALLEVLPSFLHMEFSRKLEPLMLYLRLT*

>peptide 2 (58 aa)
MEDDEHEKNGCFLHELHGCVVGGSSQLPTYGVFSEVGTTDALFKADLVKEKTMKASAN*

>peptide 3 (32 aa)
KGWIRYHTCQGSLAMKLQVQRWWLISPLHGRR*

Sequence

>CNT30578574
GTAAGGGATGGATACGTTACCACACTTGTCAGGGCAGCCTGGCAATGAAATTGCAGGTTCAGAGGTGGTGGTTGATATCGCCATTGCATGGAAGACGATG
AGCATGAGAAGAACGGATGCTTCTTGCATGAGTTGCATGGTTGCGTTGTTGGAGGTTCTTCCCAGCTTCCTACATATGGAGTTTTCTCGGAAGTTGGAAC
CACTGATGCTCTATTTAAGGCTGACTTAGTTAAGGAGAAAACGATGAAAGCTTCAGCTAATTAATCAGCTCCTAAATTCTGAGCACATATAAAGCCAACC
CACTCTCTGATTACCAAAGTTTCGAAAATTTAACGTTCATAAGCCGTTGTTTTTCCAATGTATACCAATGACTTGCACATTATTTATTTGTATTGGACCA
GAAAGAAGATTTCAT