Detailed information on CNT30578572


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071898Oryza barthiiQuercus suber36.3245.5881.76170forward
CNT30224824Oryza barthiiHordeum vulgare45.7338.8488.79214forward
CNT3068273Oryza barthiiLeersia perrieri99.3661.5188.82465forward
CNT30371297Oryza barthiiOryza glumipatula65.8187.2584.09308reverse complement
CNT30105029Oryza barthiiOryza longistaminata93.5995.0191.1438forward
CNT30104659Oryza barthiiOryza rufipogon99.7996.4999.57467forward
CNT30582636Oryza barthiiEchinochloa crusgalli42.0940.5389.85197forward
CNT30496955Oryza barthiiDigitaria exilis41.6743.3387.69195forward
CNT30118011Oryza barthiiOryza nivara84.499.7599.75395forward
CNT30593120Oryza barthiiEragrostis curvula32.055391.33150forward
CNT30604793Oryza barthiiOryza punctata75.6476.4691.24354forward

Expression of CNT30578572

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MNIQSFASIIPPDVTWKTSSPSGRLGASKILQTRCSPLPFLSINRMVAACASTWPPAGFFGSVMNIPP

>peptide 2 (37 aa)
SGESYHHVNLLYIFHLRQYCICFSTTVDLISIEKYPF*

>peptide 3 (30 aa)
MQEFTRRNLNNLKTGSTLNEHSVFRIHYST*

Sequence

>CNT30578572
TCTGGGGAAAGTTACCATCATGTAAACCTCTTATATATTTTTCACTTAAGACAATACTGTATTTGTTTCAGTACAACTGTTGATCTCATAAGCATAGAAA
AATACCCATTTTAAGGTATAATCGTCTGGATAAATGAGGTTGCATATTTCCTCGACAGTGGCAAAGTAGCAGTAGTAGTTTAGTCAATGTACCAAACCTA
TATGGCCTATGCAGGAATTTACTAGGAGAAACCTGAACAATTTGAAGACAGGAAGCACCCTCAATGAACATTCAGTCTTTCGCATCCATTATTCCACCTG
ATGTTACCTGGAAAACGTCTTCTCCCTCAGGCAGGTTAGGGGCATCAAAGATCTTGCAGACACGCTGCTCTCCTTTGCCTTTCCTCAGCATCAACCGGAT
GGTAGCTGCATGCGCCAGCACGTGGCCTCCCGCTGGTTTTTTCGGGTCAGTTATGAACATTCCACCAC