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Detailed information on CNT30578571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697898Oryza barthiiOryza sativa62.1682.1295.77496forward
CNT30104662Oryza barthiiOryza rufipogon73.5649.798.13587forward
CNT30115821Oryza barthiiOryza nivara27.6942.0297.74221forward

Expression of CNT30578571

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPRTPHEHTQTKSTDNAHEIMKKRPLSSMAPLSRALLGPPS*

>peptide 2 (67 aa)
MREGGGEMTGSAREGKRLLYPPLQTPPSPKQPPPIISLESRRMPKSKSYEEESHGDPVSERAGGRRD*

Sequence

>CNT30578571
GACAATAACACTACTTTATTATCACCAAAGAAAGGAGATTGCATAGCATCTTTAATTGAATAAGTGGTACAGTTACATTTATTTGAAGAATTGCAGCTCT
TACAGCTACCAAAACCATCGCTGGTCAGAACTCCCAACAAGCAAAGAACACACATCCATATGCCCCGGACCCCACATGAACATACACAAACAAAATCAAC
TGATAACGCACATGAAATCATGAAGAAACGTCCACTATCTTCAATGGCACCACTCAGCCGCGCTCTCCTCGGTCCACCATCTTGAAAGCTCCTCTCCAGC
CAGCCGAACAGCTAACGGGGAGTCCGCTCTCACAGGATCCGACGGCCATGGAATCCTCATCAGCAGAACCACAGGTCAACCTTCGTCCGCCATCTTGAAA
CCTTCTCTCCGACCAGCCGGACAGCTACTGGCAAATCTGCGCGAGAGGGGGCGGAGAGATGACGGGATCCATGCGGGAGGGGAAGTGGTCACAAGATCCG
ACGCTCCCGTAGCTGCTGATGGCTGATCCATGCGAGAGGGGGGCGGAGAGATGACGGGATCAGCGCGAGAGGGGAAGAGGTTGCTGTATCCGCCCCTCCA
AACGCCGCCATCACCAAAACAGCCACCACCGATCATTTCGCTGGAGAGCCGCAGGATGCCCAAATCCAAGTCCTATGAGGAGGAAAGCCATGGGGATCCA
GTGAGTGAGAGGGCAGGAGGGAGGAGGGACTGAGGGAGAGAGTTGTTTGGTCTGGGTGAGTGGGAGGGGAGGAGGAAGAGAGTCAAGGAGAGACCGTT