Detailed information on CNT30578566


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555662Oryza barthiiOryza glaberrima10099.05100524forward
CNT30597179Oryza barthiiOryza meridionalis10095.4598.28524forward
CNT30371482Oryza barthiiOryza glumipatula10095.198.85524forward
CNT30104732Oryza barthiiOryza rufipogon92.3798.5798.35484forward

Expression of CNT30578566

Peptides detected in this lncRNA

>peptide 1 (71 aa)
FQLLLLLDFFILWQQWRRVAGCRRPETGEQSRRGGAAARDEQEEAAERRVVAHPRAAVLVRAERWVSPGSG*

>peptide 2 (40 aa)
LPATSSFRFLYPVAAVAKGSWLPAPRNRRAEPAWWGGSEG*

>peptide 3 (59 aa)
MSRRKLQSDEWWRIHARPCWYGRSDGYRRVVAEDIVADRSEREQHTRMCKNLSNNTSKL*

Sequence

>CNT30578566
CTTCCAGCTACTTCTTCTTTTAGATTTCTTTATCCTGTGGCAGCAGTGGCGAAGGGTAGCTGGTTGCCGGCGCCCAGAAACCGGCGAGCAGAGCCGGCGT
GGTGGGGCGGCAGCGAGGGATGAGCAGGAGGAAGCTGCAGAGCGACGAGTGGTGGCGCATCCACGCGCGGCCGTGTTGGTACGGGCGGAGCGATGGGTAT
CGCCGGGTAGTGGCTGAAGACATCGTTGCTGATAGGTCTGAAAGGGAGCAGCACACCAGGATGTGCAAGAACCTATCAAACAACACTTCGAAGCTCTGAG
GTTTCAACTTCAGAGTTTACAACCCACACTCTGCTCCACATTTCATTTCTATCATGGGAGATGTCAAATAATTGTTGTAATGATTTGAGAAGACAAGTAG
AGAATAAATAAATGAGTACCCGAACATTATTCATGTACTCTGTAGTTGAATCCATCAGGAGAGAAAGATATTTTTCTCATAAACAGGGTTAATCGGAAGT
TAAAAATCAATAATGACAAAGAAC