Detailed information on CNT30578558


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002184, E-value = 1e-162

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104668Oryza barthiiOryza rufipogon67.4953.0798.53544forward

Expression of CNT30578558

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LYPLHKDPARCFGNRRRRRRCDRDRRGNHN*

>peptide 2 (32 aa)
MIISVQGSKGIPVYAGSDLGKDSNNKDSLISS*

>peptide 3 (65 aa)
MAAATNPSLASAGSPARPPHRSTKKIAKPACALMAREAENGIHDPMKDIVLGADTLMSTKCLIDA*

>peptide 4 (40 aa)
YCTPCTRIRRGASATGGGGGGATGTGGGTTTRVAVTRRRG*

>peptide 5 (47 aa)
TVPPAQGSGEVLRQPEAEEEVRQGQAGEPQLELQSHGGEGNGGGHQP*

Sequence

>CNT30578558
TACTGTACCCCCTGCACAAGGATCCGGCGAGGTGCTTCGGCAACCGGAGGCGGAGGAGGAGGTGCGACAGGGACAGGCGGGGGAACCACAACTAGAGTTG
CAGTCACACGGCGGCGAGGGTAATGGCGGCGGCCACCAACCCTAGCCTTGCCTCCGCTGGATCCCCAGCGCGTCCTCCTCATCGATCGACGAAGAAGATA
GCGAAGCCGGCGTGCGCGCTGATGGCGAGGGAGGCCGAGAACGGCATCCATGATCCAATGAAAGATATAGTACTGGGTGCAGATACCCTAATGAGTACCA
AGTGCTTGATCGATGCATGATAATCTCTGTCCAAGGCTCCAAAGGCATTCCGGTTTACGCTGGCAGTGATCTTGGCAAAGACAGCAATAATAAGGATTCT
TTGATTTCCTCGTAAAAGAAGCACATATGGAATTGGTAGCTTTACTAAAGTTTACAACCGAATTCGATTCTGTAGCATGAAAATAGGAGATCAGAGCGCA
TCTAGGATTTTGTTAGATTTTGGAGGCTGGTATGCGGAAGGGGAAGGAGGTGGGTAGGACCGGTGTTTATAAATTATTAGAGTGTCACGTGGTGGTTTAG
GAGTGTGTGTAGGAGGCCATGTGACAGCCTAGGAGCGTTTATAGGGTGTTTCATGGACTTTTAGTGTATAATAGATAGATAGAAAGATATGGTAGAGTTC
TATGATTTAATTGTATAAGAATTTCGGGACCTACTGAATTGCATAGGATTTAATAGTTATAGGATTGTACAATATTTCTTGTTTTCCCAGTTCAGCCGCA
CCGCTA