Detailed information on CNT30578557


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y205|RBS1_ORYSI, E-value = 2e-50

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555604Oryza barthiiOryza glaberrima80.27100100944forward
CNT30371385Oryza barthiiOryza glumipatula54.5110096.1641forward
CNT30104624Oryza barthiiOryza rufipogon56.7289.5398.2667forward

Expression of CNT30578557

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MCVGSVGNYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLEGSDGGGRRRHHGGGHLCSSPSSLLLCSSTS*

>peptide 2 (58 aa)
MAAALASRGGRGCGRIGRRARAYPRAFVAGSRARGGVAPGSWVVAVVASRPGLWLWSSS

>peptide 3 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 4 (76 aa)
MHLILPPLLTLPKLELPERRAMGMPAVDLSPWKGATVVADDAITEGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

>peptide 5 (74 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVLHGERWQVGEGLELLDALNRPHLNE*

Sequence

>CNT30578557
AGAAAGGCATTTCCGATGAACAACAGAAGCATGATTTTTTAATTCCATGATCAAATTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGAT
TCACATCCATCTCATACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGAT
ACCACTCTTACATCAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACAC
GAAACAAGGTGGGAGACATCATCGAATCAGAGATGAACAATTAAACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGG
GGGCTTGTAGGCGATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCG
AGCTCCTTGAGCACCTGGGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCACATGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAAC
TTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAAACGATAATTGAGTTGTTGGTTAATGTTGGTTAAGAAGAAGAAGAAGAAGAAGAATGTGTGTT
GGATCAGTAGGTAATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGATGGGCATGCCGGCG
GTGGACTTGAGCCCCTGGAAGGGAGCGACGGTGGTGGCCGACGACGCCATCACGGAGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTC
GAGTACTTCTTGAGATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAGCCAAAACTCAGCGGTCTCACCCTCCCTAGCTAGCTAATCGGAT
GGCAGCGGCGCTCGCGAGCCGCGGAGGCCGGGGATGTGGTAGGATTGGCCGGCGTGCGCGCGCCTATCCGCGGGCGTTTGTGGCTGGCTCACGCGCGCGC
GGTGGTGTCGCGCCGGGCTCGTGGGTTGTGGCCGTGGTGGCATCTCGACCCGGGCTCTGGCTGTGGTCCTCGTCTT