Detailed information on CNT30578546


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000884, E-value = 7e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554027Oryza barthiiOryza glaberrima59.8992.8695.93221forward
CNT30371228Oryza barthiiOryza glumipatula89.4346.7486.36330forward

Expression of CNT30578546

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LQDPTRPYRLWASPAEDPLGSSEALSRRRKGTVG*

>peptide 2 (29 aa)
STRSDKALSALGVPSRRSLRFLGGLVKTA*

Sequence

>CNT30578546
CTCTACAAGATCCGACAAGGCCTTATCGGCTCTGGGCGTCCCCAGCCGAAGATCCCTTAGGTTCCTCGGAGGCCTTGTCAAGACGGCGTAAAGGGACAGT
AGGATAGGTTTCAACGCTAGGTATCGTCGTGGTAAGGGATCTCTGGGTAAAACACTTGGCGATATTGTGTACCTGCTATCAACTTTGTTGAAATAGAGGT
AGTAGGAGAGTCGCTACATCGCTGGTCGAGGACCAGGTAGTAGTCGTATCTCGACCACTTAAAGTGGAAATAGTGGGAGAAACGCTACATCGCTAGTCGA
GGACCAGGCAGTAGTCGTAACTCGACCACTTAAAGTGGAAGTAGTGGGAGAAACGCTACATCGCTGGTC