Detailed information on CNT30578542


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SLN8|DBR_TOBAC, E-value = 1e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697919Oryza barthiiOryza sativa67.3354.5588.99336forward
CNT30186275Oryza barthiiSecale cereale18.0438.9683.3390forward
CNT30597190Oryza barthiiOryza meridionalis76.9598.9796.35384forward

Expression of CNT30578542

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPPSLPLGTQPFPPRTGSTCHRSQTQGTPPYAGAW*

>peptide 2 (31 aa)
QIVEHIYSLFLFSEPHKTNGMPPFLKSEQLQ*

>peptide 3 (64 aa)
MLICVPSSVAPHHSRAMATSCFPTLWPVKSLMSAAGAASSPSTTSSTYATFPSFRYPAISSSNW*

Sequence

>CNT30578542
CCCAAATCGTTGAACATATCTATTCTTTATTTCTATTTTCTGAACCCCACAAGACAAACGGGATGCCCCCATTTCTGAAATCTGAACAACTACAGTAGTA
CTCCTTGGTAATGCTAATTTGCGTGCCAAGCAGTGTGGCACCGCATCACTCTCGTGCGATGGCGACGAGCTGTTTTCCGACATTGTGGCCGGTGAAGAGC
TTAATGAGTGCTGCCGGTGCCGCATCGAGCCCCTCGACGACGTCCTCCACGTATGCCACCTTCCCTTCCTTTAGGTACCCAGCCATTTCCTCCTCGAACT
GGTAGTACCTGTCATAGAAGTCAAACACAAGGAACCCCTCCATACGCAGGCGCTTGGTGACGATATAGAACAAGTTTTTCACCCCCTCTGGCCGCTCTAG
GTTGTACTGCGAGATCATCCCACATGCCACAATCCGACCACCCAGACTCATATTAGGTAGCACTGCGTCTAGCATTTTGCCGCCCACATTTTCATAGTA