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Detailed information on CNT30578530


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001087, E-value = 3e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116314Oryza barthiiOryza nivara29.6871.9891.95149reverse complement

Expression of CNT30578530

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MDADVTALQPPKRRRPDCLLLSLLPALYGTEKKKGTGGRRRRKRKGKTDSRVYCLLDGNLWYFENRIIRLPILDYLRWSKSLFGVFA

>peptide 2 (29 aa)
LPCPISFTGATLTKSSRHHTCPPPTNPFF*

>peptide 3 (34 aa)
AMPNLLYRSNTNQILAPPYLPPSDEPIFLVSPLL*

>peptide 4 (39 aa)
MEQRRRKEREEEGEEKEKERLTVESIVFWMATYGISRIG*

Sequence

>CNT30578530
TTGCCATGCCCAATCTCCTTTACCGGAGCAACACTAACCAAATCCTCGCGCCACCATACTTGCCCCCCTCCGACGAACCCATTTTTCTAGTTTCCCCTCT
CCTTTAGCCATCCTATAAGCCACCATCACCACTTCTTTTACTCGCCGGAGTTGAGCTCTTGTCGTCGCCGTTTCGGCCATCTCCCTCGCTCTCTCCGCCA
GCCACCGCCCTCCCCGGGTGCGTCGTGCTCGGGAACACGCATGGACGCCGACGTCACCGCCCTCCAGCCACCGAAGCGCCGCCGCCCCGATTGCCTTCTC
CTCTCTCTTCTCCCGGCTCTCTATGGAACAGAGAAGAAGAAAGGAACGGGAGGAAGAAGGAGAAGAAAAAGAAAAGGAAAGACTGACAGTAGAGTCTATT
GTCTTTTGGATGGCAACCTATGGTATTTCGAGAATCGGATAATCAGGTTGCCTATCTTGGATTATTTGCGTTGGAGCAAGAGTCTATTTGGAGTTTTTGC
CG