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Detailed information on CNT30578506


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672556Oryza barthiiSetaria viridis14.0967.8891.96224forward
CNT30393881Oryza barthiiTriticum turgidum12.3948.8890.36197forward
CNT30587002Oryza barthiiMusa acuminata5.4131.8593.0286forward
CNT3086243Oryza barthiiVigna radiata12.4544.385.35198forward
CNT30511330Oryza barthiiSolanum lycopersicum6.7326.2386.92107forward
CNT30440426Oryza barthiiAegilops tauschii7.4225.1696.61118forward
CNT30624277Oryza barthiiDaucus carota7.1123.7483.19113forward
CNT30338628Oryza barthiiEragrostis tef18.9985.0794.37302forward
CNT30367313Oryza barthiiSorghum bicolor14.5340.6793.94231forward
CNT30596728Oryza barthiiOryza meridionalis28.9995.0599.13461forward
CNT30371441Oryza barthiiOryza glumipatula25.6610099.75408forward
CNT30646608Oryza barthiiCannabis sativa14.1548.2883.11225forward
CNT3024196Oryza barthiiPopulus trichocarpa6.2922.0385100forward
CNT30322486Oryza barthiiAsparagus officinalis6.8623.2486.24109forward
CNT30151232Oryza barthiiBrachypodium distachyon15.2820.0593.42243forward
CNT30104724Oryza barthiiOryza rufipogon63.8497.2296.751015forward

Expression of CNT30578506

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRPTFWPGGASRRTVEAFPALSIGFSVLPPPAT*

>peptide 2 (30 aa)
MTTKTANIHHKCDQSTKQKARPYWNTCPLI*

>peptide 3 (49 aa)
MHRQTISSTYATTILMVEQIESIHGQQYQVVHIQLYYNDRKNSRIIEQN*

>peptide 4 (63 aa)
MGITWMCRCRARCRWRAWRGGRSRRTAPCTSPPPRRTAPSGACTGTGGGTSPWRAARRGRGRG*

Sequence

>CNT30578506
AGCTAATTCAACAACTCAAGGATTAAATAACCAGGTAAAAACTTCTTTAGGTGGAATGTAGAATCCAGACCATGACCACGAAAACTGCGAACATTCATCA
CAAATGTGACCAGAGTACCAAGCAAAAAGCACGACCATACTGGAATACATGTCCTTTAATCTAGCGATGATAAGCATGGTAGCGAATATGGATAGTAGCA
ACAATAAGTAACACTCTAAGTGGCCTTGTCGGCCTTGGCAGCGGTAGCGGCGGCCTGGCCTCTGAGACGACCAGTCCTCCTTGCAGCGATGAGACCAACC
TTCTGGCCAGGAGGTGCATCACGGCGGACGGTGGAGGCGTTTCCAGCCTTGAGCATCGGCTTCTCAGTCCTGCCACCACCAGCAACCTGACCGATCATGG
CACGGCAGCTGCTGGGGACAATCTTCTTGGCACCAGAGGGGAGCTTGATCCTGCAAGAAAATAATATCAACTAGTTGCATGAGCAATACAGTTTATTTGC
ACTGAACATTACAAAAAAATTGCAGGAATAAAAATACTTCACAAGGCCAAGGACATCTCTCCAACAGAAGCAAGCATGCGGATCAAACAAGGCGCATATG
TAAAGGATTATCTTCTATGTTAGCATACATACATCACTTGATAGCAAAATCATAAGCACAAACATAATTCACCACTTGAAAGAGCGAATTGGCCAATCAT
ATTAATCATGCATAGACAAACAATATCTAGTACATATGCCACCACAATCTTGATGGTAGAACAAATAGAAAGCATCCATGGGCAACAATATCAAGTAGTA
CATATACAACTATATTATAACGATAGAAAAAACAGCAGGATTATTGAACAAAACTAGTTGTTTGTGGTGCTCTATTACACAGTATCAACAAAAGCAATTG
TTCGAAAATACACTAAACTAGCTACATCCAAGGCATTCGAATCATCTCTAAACAAATGGTACATATATTTACTTTGGGTCTCTACTAAATAACAAATAAT
TAAAGCAACATTAAATCGCATCATCCATATTTAGATTGAGCCGAGATCATTTCCAATAGATGAGTTCTTCTAATCACGCGAACAAATCAATTCAGATCCA
ATAATAGTAGTTACTACCACACAACTACGACACTAACAAACAGATCTAACACAAAACATCTCATCAATTCAGGCAAAAAAAAAGAAGCGAGAGAGATGGG
GATCACCTGGATGTGCCGTTGTCGGGCACGTTGCCGATGGAGAGCGTGGCGCGGCGGCCGCAGTAGACGAACTGCCCCGTGTACATCCCCTCCGCCGCGA
CGAACAGCTCCTTCTGGTGCTTGTACCGGAACGGGTGGCGGAACGTCACCTTGGCGAGCGGCGCGCCGCGGCCGGGGTCGTGGATGATGTCGGTGACGAC
GCCCTTGAGGTAGCCGTTGCGCTCGCCGAAGTCGAGGGAGCGGAACCTCGCGGGGCCCTTGCGGTGGTGGGTGTGGGACTTGAACACGGAGCCCGCACCC
TTACGCTGCGCGCGGATCACGCGACCCATCTCCTCGTCGGCGGCGAGACGGCGGCGGCGGCGGCGGGGAGAATGGGGGAGGCGGGGGTGG