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Detailed information on CNT30578504


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697684Oryza barthiiOryza sativa66.0996.0699.73731forward
CNT30672806Oryza barthiiSetaria viridis9.6735.4388.79107forward
CNT30555702Oryza barthiiOryza glaberrima99.4694.5899.181100forward
CNT30597240Oryza barthiiOryza meridionalis28.347.2195.21313forward
CNT30371513Oryza barthiiOryza glumipatula96.6510099.531069forward
CNT30104336Oryza barthiiOryza rufipogon96.0295.0899.811062forward
CNT30604831Oryza barthiiOryza punctata29.6655.8891.16328forward

Expression of CNT30578504

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMIRWGVSSSSSGALHGRGTSRQLPVVDRG*

>peptide 2 (53 aa)
MIRDIMSMMGRVHVCMYVCCCATPQSYHTYKQAKLMQSLITGCHPATSVPWSI*

>peptide 3 (88 aa)
MTPWRGRRRKAQLGCLVEQLLLQFQLALHPLSSLLLPMVLEEQPQIQPVLHLPSRFRLVLEQECRRLRSCWHLQQFSSPHRCLLEHLR*

>peptide 4 (39 aa)
HCEKGSNTNLKFNLPQIPFRSNHRSTMFKHKTQLRLHHY*

Sequence

>CNT30578504
TACACTGTGAAAAGGGCTCGAATACGAATTTGAAATTCAATCTCCCCCAAATTCCATTTCGTTCAAACCATCGATCTACAATGTTCAAACACAAGACACA
ACTTAGATTACATCACTACTAGTATTACACAGGCATTACCGGGGAATATATCCAAACCACCCTGCCTGATGGGTTGATGGATAATCTTAAATGGATGGAT
AAGAGGATGCACATCCACATCCAACCTTATTCATAGATAGCTAATCAAGTCATTACACATAATACAGCACAGGTACAAACACAGACAGACGGACGGACAG
ACGACGGTATATATGTCCTAAGATTAATGTGCTTACAGCAAGTTAGGCATGATAAGAGATATTATGAGCATGATGGGTAGGGTACACGTATGTATGTATG
TATGTTGCTGTGCCACACCACAATCATACCATACATACAAGCAAGCTAAACTGATGCAGAGCCTAATAACCGGCTGTCACCCAGCAACGTCAGTTCCTTG
GTCGATTTGATTACACAATGCAAATGCGAATGATTCCTAAAAGGCGTACATCACGGACAAGGGGAGGAGGATGATGATTCGTTGGGGGGTTTCATCTTCA
TCTTCAGGTGCACTTCACGGCAGAGGCACCAGCCGGCAGCTGCCCGTTGTTGACAGGGGATGACTCCTTGGCGGGGGCGGCGGCGGAAGGCTCAGTTGGG
TTGCTTGGTGGAGCAGCTGCTGCTTCAGTTTCAGCTGGCTTTGCATCCTCTTTCTTCTCTCCTCCTTCCGATGGTGCTGGAGGAGCAGCCTCAGATTCAG
CCGGTTTTGCATCTTCCTTCTCGGTTCCGGCTGGTGCTGGAGCAGGAGTGTCGGCGTCTGCGGTCTTGCTGGCATCTTCAGCAGTTTTCATCTCCACATC
GGTGTCTTTTGGAGCATCTTCGCTAGGGGCCTCCTTCGCCTCTTCAGCAGGCTTTGTCTCTACATCAGTCTCCTTTGGAGCATCTTCGCTAGGGGCCTCC
TTGTCAGCTTCAGCATCTTTCGCTTCTTCATTTTCGGTGGCCTCCTTTTTCTCCTGCTTGCCCTTTCTGCCAGATGAGTTCCTAGAACGTTTCGGGATCT
TCTCCC