Detailed information on CNT30578501


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 6e-76

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672589Oryza barthiiSetaria viridis22.4631.5485.71252forward
CNT30180337Oryza barthiiSecale cereale24.8719.4787.1279forward
CNT30298748Oryza barthiiTriticum aestivum29.0668.0686.5326forward
CNT30393324Oryza barthiiTriticum turgidum29.0630.9685.58326forward
CNT30664831Oryza barthiiTriticum dicoccoides29.0651.9186.5326forward
CNT302730Oryza barthiiZea mays22.4639.8784.92252forward
CNT30648517Oryza barthiiRosa chinensis19.2542.3587.96216forward
CNT30597252Oryza barthiiOryza meridionalis28.0769.2398.73315forward
CNT30151009Oryza barthiiBrachypodium distachyon28.762.8986.65322forward

Expression of CNT30578501

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MCVGSVGNYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLEGSDGGGHLCSSPSSLLLCSSTS*

>peptide 2 (36 aa)
MAAALASRGGRGCGRIGRRARAYPRAFVAGSRARGGV

>peptide 3 (68 aa)
MHLILPPLLTLPKLELPERRAMGMPAVDLSPWKGATVGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

>peptide 4 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 5 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

Sequence

>CNT30578501
CCATGATCAAATTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTCATACCCTTTGTATAAATATATATAGCCGGAG
CTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAGAGATCAGGTGAAACAAAAA
CAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCATCGAATCAGAGATGAACAATTAA
ACGAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGAGCTGCACCTGCCTGACGT
TGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCGGTGCACCCGAACATGGG
CAGCTTCCACATGGTCCAGTACCTGCCGTCGTAGTATCCGGGGGACCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACC
CACTTGGAACGGAGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAAACGATAATTGAGTTGTTGGTTAATGT
TGGTTAAGAAGAAGAAGAAGAAGAAGAATGTGTGTTGGATCAGTAGGTAATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTG
GAGTTGCCGGAGCGGCGGGCGATGGGCATGCCGGCGGTGGACTTGAGCCCCTGGAAGGGAGCGACGGTGGGGGCCATCTCTGCAGCTCACCAAGCTCTCT
CCTTCTTTGCTCGAGTACTTCTTGAGATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAATAGCCAAAACTCAGCGGTCTCACCCTCCCTAGCT
AGCTAATCGGATGGCAGCGGCGCTCGCGAGCCGCGGAGGCCGGGGATGTGGTAGGATTGGCCGGCGTGCGCGCGCCTATCCGCGGGCGTTTGTGGCTGGC
TCACGCGCGCGCGGTGGTGTCG