Detailed information on CNT30578494


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404178Oryza barthiiBeta vulgaris2018.4988.7371forward
CNT30563287Oryza barthiiActinidia chinensis29.8622.8484.91106forward
CNT30555769Oryza barthiiOryza glaberrima10083.53100355forward
CNT30361575Oryza barthiiSorghum bicolor8044.4490.85284forward
CNT30597233Oryza barthiiOryza meridionalis10096.4799.15355forward
CNT30323655Oryza barthiiAsparagus officinalis10010082.25355forward
CNT30118019Oryza barthiiOryza nivara99.1510099.43352forward
CNT30333334Oryza barthiiCynara cardunculus98.0343.6181.9348forward

Expression of CNT30578494

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MYLIPASAICFQMLALRSVATFSKSSALLFPSQKDSRANLSSLLGPMRGYPTM*

>peptide 2 (33 aa)
VGVKPLGHLHSRDSGISPSHREVGAEPNLSTSP*

>peptide 3 (29 aa)
MSSALGQHQAWQSCQEPDHSTRRCCWGCT*

Sequence

>CNT30578494
TAGTTGGTGTCAAACCACTTGGTCATCTCCATAGCAGGGACAGTGGCATTTCCCCTAGCCATCGAGAAGTAGGTGCTGAACCCAATCTCTCCACCAGTCC
ATGAGTAGCGCTCTGGGACAGCACCAAGCATGGCAGTCGTGTCAAGAACCTGATCATAGTACGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCGTC
AGCCATTTGCTTCCAGATGCTGGCCCTGAGGTCGGTCGCAACCTTCTCCAAATCCTCAGCGCTGCTCTTCCCATCCCAGAAAGACTCCAGGGCAAACTTG
AGCTCCCTCTTGGGGCCCATGCGGGGGTACCCAACAATGTGAGACGCCATCTTTC