Detailed information on CNT30578475


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676816Oryza barthiiSetaria viridis2.9530.3297.0167forward

Expression of CNT30578475

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIRFLLDFVFLFHTVWWISKLDKEFDNSTQL*

>peptide 2 (31 aa)
MPVGEVALSIPSGTQREVVMISSTSVPLLVE*

>peptide 3 (65 aa)
MWLLGAIISHAIKNTSFFLWLALVSTGFQGMEYYQAPSTISDSXYGSTFFLATGFHGIHMIIGIDC

>peptide 4 (68 aa)
MERDLGGYKKGYRATNTKAINMHVREVPLLIYLFYFLKEWLVSSIRSSQVPLQIYSFDASWRSGVKHP*

>peptide 5 (32 aa)
MLSCATSRTSVSRSCRKRLQMDFPLIAIPFFV*

>peptide 6 (65 aa)
AEVKDRRSSRSAKEPSSRWWCWHGSHLSRSSRRDCYSIRPSAEVTPGRYNKLRLSGRNQQACCNK*

Sequence

>CNT30578475
GCAGAAGTGAAAGACCGTAGAAGTTCAAGATCAGCAAAAGAACCTTCGTCCCGGTGGTGGTGCTGGCATGGTTCCCATTTGTCTCGGAGTTCCAGACGAG
ATTGCTATTCAATCAGGCCTTCAGCCGAGGTAACTCCGGGAAGATACAATAAATTAAGACTAAGTGGTAGGAATCAACAAGCATGTTGCAATAAATAAAA
AAAACTACTTTTTCTTCCCCATTGTTCTTCTCAGTGGAGTGATCTCTCTCTTAAATTCCCATAAGGATAAGGAAAAGTAGANGGTTCGAAACCCGTGCTT
AAATCCTACTCAAGGCCCACTACGGGTAGCGAGCAATTAANAAATAGAGACAAGGATGAGGAGAAATGACCCATATACGGCCGGGCTGTTCTTCCTCTAG
GTCTCTCCATTCCCAAGGAAGCTTGCTTCTTCGTGGGCTATAAGACATTAACAACTGACTCTCGAGTATTCCTATCATCAGGTTTTTCGTCGGGTATATT
CGCATTCGTACAAATGGAAGGCATCGCGTACGTTAACCTTCCTTTATTGGGCTGGGCCATTCCATCTTTGAGAAGGGGGCTTTGCATCTGACATTCGTTA
GGCTTTCCTCTGCGGGAGCCTGCGTCCCGGCCTTTTTGTGCTGCCAGTCCTATCACCAGTGAATGCTGTCATGCGCTACTTCCCGAACCTCCGTGTCTAG
GTCCTGCCGAAAAAGACTGCAAATGGATTTTCCACTCATTGCCATTCCTTTCTTTGTTTAGCTTTTCGTTGTCTAGAANATCCTAATTTCGTGTACTNNA
TTTACTAGCTTTTTGTTCCCGCGGACAAGAGAATCTCATAGAAATTCAGTACACGAAAGCTGTCAGCCCCAGACATGGAAGTCAAATTTCATTGAGAGGA
ATTAGCAAAGAAAAGAAATCTTCTTTCTGGGCGCCGTAAGTAAATGCGTAACTAGGAATTTGGAAAATTGCATTTTTGGAATTTGCAATAATGCGATGCC
CATGATAGCTGGATCCTGATGACCTANCCCGAAGCGTGACAAAGAAATGTCAATGCTATCGGTTTGTTTTTTCTCATGATTCGGTTTCTCTTGGATTTTG
TGTTTCTTTTCCACACAGTTTGGTGGATCTCAAAGTTGGATAAGGAATTCGATAATTCAACCCAGCTATAGTCCTTTAGCAGCTCCTGCACTTTAGGTAA
AAAAGAAGGACAATTCATGGCTGATCCAAGGATCTCCCCTACTGTCTCTAGTCCCGTACTGATATAGTATAGTCTATTGATACAGTATCCACCCAGGCTC
AAATCAAACCTGATTTAATGGAAAGGGACCTAGGGGGCTATAAAAAGGGCTATAGGGCCACTAATACAAAAGCGATCAACATGCACGTTAGAGAAGTGCC
TCTACTTATTTATTTATTTTATTTTCTAAAGGAATGGCTCGTTTCATCAATTCGCTCGAGCCAGGTGCCACTTCAAATTTATTCTTTTGATGCCAGTTGG
CGAAGTGGCGTTAAGCATCCCTAGCGGTACGCAAAGAGAGGTCGTGATGATATCATCTACGTCCGTACCACTCCTCGTGGAGTAGATCCCGCATCCAACC
AACCCTTTTTTGACCAGGGAACGGGAGAATTCCCACTACAGCTGGCAGGCCAGCCGGGCCGTGAGCGCGGTGGGAACGGGCTTCCCAAAAACCGAGCCCC
GCCCGGGGGGGGGGGCAAAGGGACGGTTGAGCGACTCAAGCGAACCNCCCTACCTGACTTTGGATAAAGATAGAAGGGAGAAGGTTGTGAAGGTGGCCTC
ATTATCCACACATCTGGTCGGAGGACCAACCTGTTTTCACGAGCGTAGGCGGAGCCTTTCTCTTTTGTAGATGGAGTGGAACTACACAACTCTCCTATAT
CCTCTTTTCTGCGATCAAGAAGTTGACGGTATGTAGGCTCATCTACCCAATGATTGTTAACCGTCTACTCCAGTAGTTGTTCGGTTCTTAGTCGATAAGT
CTGTCTTCTTTCTATTCTTCTTTGAACTTTCTATCAAATCAAGCAATTCCAATTTAAAGTTGCAGCTGATATGTGGCTACTAGGTGCGATCATCTCACAT
GCCATAAAAAATACTTCTTTTTTTTTATGGCTGGCTCTAGTATCCACCGGCTTTCAAGGAATGGAATATTACCAAGCACCCTCCACTATTTCGGATAGTN
TTTACGGTTCTACCTTTTTCTTAGCAACTGGCTTTCATGGTATTCATATGATTATAGGTATTGATTGCT