Detailed information on CNT30578474


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY5|METE1_ORYSJ, E-value = 9e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672513Oryza barthiiSetaria viridis28.514.2591.2357forward
CNT30377828Oryza barthiiArabidopsis thaliana23.513.6291.4947forward
CNT30224666Oryza barthiiHordeum vulgare5045.0588100forward
CNT30264857Oryza barthiiBrassica rapa3120.687.162forward
CNT30478263Oryza barthiiArabidopsis halleri23.513.5891.4947forward
CNT30619828Oryza barthiiCajanus cajan3921.5584.6278forward
CNT30118059Oryza barthiiOryza nivara89.561.0998.88179forward

Expression of CNT30578474

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLRPSTTPAKRYFPEGKPALLIRSRVLAPRIRSKP*

>peptide 2 (65 aa)
PTIASRDSRGSERCSEIISPDVASIHNTGKEVLSRGETSTLDKVKSLGSTDKVKTISSHAVQGCEG

Sequence

>CNT30578474
TCCAACAATAGCCTCAAGAGACTCGAGGGGTAGTGAGAGATGCAGCGAGATCATCAGCCCAGATGTTGCGTCCATCCACAACACCGGCAAAGAGGTACTT
TCCAGAGGGGAAACCAGCACTCTTGATAAGGTCAAGAGTCTTGGCTCCACGGATAAGGTCAAAACCATAAGCAGTCACGCTGTTCAGGGATGTGAGGGTC