Detailed information on CNT30578440


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697886Oryza barthiiOryza sativa68.8856.2594.57405forward
CNT30597173Oryza barthiiOryza meridionalis85.8810099.8505forward
CNT30371519Oryza barthiiOryza glumipatula65.1410099.74383forward
CNT30104637Oryza barthiiOryza rufipogon97.1197.1199.47571forward
CNT30117979Oryza barthiiOryza nivara69.7310099.51410forward

Expression of CNT30578440

Peptides detected in this lncRNA

>peptide 1 (36 aa)
QSPASFLSASRICSSSSFSALSPAHRYPAAAGGDGC*

>peptide 2 (82 aa)
SVSCFLSLCLADLLLIVFLRSLAGSPLPGGRRRRWMLVGFTGSHSVRGSPFSQRQATIHGGEVFQAACSAPLLEVSVLFYED*

>peptide 3 (38 aa)
MLTSHYFTSCCEHQYYQSTRYVRSEFFLLLSTLLCQND*

>peptide 4 (80 aa)
VSLLLPFSLPRGFAPHRLSPLSRRLTATRRPPAEMDASWIHREPFSPRLSLQPTASDDPRRRSISGGLLCSPVGSFSSVL*

Sequence

>CNT30578440
GTCAGTCTCCTGCTTCCTTTCTCTCTGCCTCGCGGATTTGCTCCTCATCGTCTTTCTCCGCTCTCTCGCCGGCTCACCGCTACCCGGCGGCCGCCGGCGG
AGATGGATGCTAGTTGGATTCACCGGGAGCCATTCAGTCCGCGGCTCTCCCTTCAGCCAACGGCAAGCGACGATCCACGGCGGCGAAGTATTTCAGGCGG
CCTGCTCTGCTCCCCTGTTGGAAGTTTCAGTTCTGTTTTATGAAGATTAGAAATTTCAGTTTATGATCTAGGAAAAGGAAATCCAGCCATGTGAGTATGT
GACTTCAATTATAAATTTAGCTTATATTTATTCGAAATATCTGAGGGCATGCTCACCAGTCACTATTTCACTTCATGTTGTGAACATCAGTATTATCAGT
CTACCAGATATGTAAGATCAGAGTTTTTTTTGCTTCTCTCTACTTTGCTATGTCAGAATGATTAGGAAATGTCAAAATTGATTTTGAAGAAACAAACGGA
TGGTTCACTTTTACAGCCTCTTCTTTTCACTTATACTTATGCTTATATTTATTAGCCAAAATTTGAATTTTCAACTTTAAATTTGGAG