Detailed information on CNT30578432


BLAST search results

BLAST vs Swiss-Prot:
sp|P08626|ICI3_HORVU, E-value = 3e-10

BLAST vs NONCODE:
NONORUT002477, E-value = 7e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697502Oryza barthiiOryza sativa42.660.8893.78193forward
CNT30384527Oryza barthiiTriticum turgidum21.1936.583.3396forward
CNT30471212Oryza barthiiSaccharum spontaneum35.122.9185.53159forward

Expression of CNT30578432

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDRSKHAHSTYHLRAGDHYLIKISMLKAG*

>peptide 2 (38 aa)
MVGVLVTVSTKMRTRLGRNRWSPATPLEARRCRRLACP*

>peptide 3 (42 aa)
GTRWEKILPYLFIGKKTLTVKHYSAGDGSIETCTQYISLACR*

>peptide 4 (46 aa)
GYPMGEDSSIFIHRKKNINGKTLFSWGWIDRNMHTVHITCVQVIII*

>peptide 5 (47 aa)
MSASGMSLRITFFASSTGSPTTSGHDVFRSSSPPELAADLTTPAMID*

Sequence

>CNT30578432
GGGTACCCGATGGGAGAAGATTCTTCCATATTTATTCATAGGAAAAAAAACATTAACGGTAAAACATTATTCAGCTGGGGATGGATCGATCGAAACATGC
ACACAGTACATATCACTTGCGTGCAGGTGATCATTATTTAATTAAGATAAGCATGCTGAAGGCAGGCTAGCCGATGGTGGGGGTGCTGGTGACGGTGTCG
ACGAAGATGCGGACGCGGTTGGGGCGGAATCGCTGGTCACCGGCGACCCCACTGGAAGCACGACGATGTCGGCGTCTGGCATGTCCTTGAGGATCACCTT
CTTTGCCTCCTCCACCGGCAGCCCCACCACCTCCGGCCACGACGTCTTCCGCTCCTCCTCGCCACCGGAGCTCGCCGCCGACCTCACAACTCCGGCCATG
ATCGATTGATGATGGTGAGCTATATATATCAGCAATATTATTAGCTTTGGAGA