Detailed information on CNT30578417


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005011, E-value = 4e-81

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555717Oryza barthiiOryza glaberrima86.05100.2592.14407forward

Expression of CNT30578417

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MCFKMIATHGQSPEKDILCNLHRDMFGQKSAAKTYGILEFVRDKSRARYGHIL*

>peptide 2 (29 aa)
MDRVLRRIFCVICIEICLGKSLPQRLMVS*

Sequence

>CNT30578417
CTTCATTGTATATTAGAATAGGGAGAGAGTAGGTAGAAGGAATCGGAGGAATCCCGGAGTTGTCGGATCGGAGATGAAGAAGAAATCGAGATCGAGTTAG
AGATGGAGATCATCCTGGAAACAGAGTAAAGATCGGCTGCAGTCCAAATCGGCTATGGCTAAGATCGGCAGGGTACGAGTCGGACAGGGTTAGCCGATTG
AGCCGAATCCGACAATATGACATTGCATATGTTGTCGGGTTAGATTGATGTGCTTCAAGATGATTGCCACGCATGGACAGAGTCCTGAGAAGGATATTTT
GTGTAATTTGCATAGAGATATGTTTGGGCAAAAGTCTGCCGCAAAGACTTATGGTATCTTAGAGTTTGTTAGAGATAAGAGTCGTGCCCGATATGGACAT
ATTTTGTAATCTCAGGTATAAATAGACCTCGAGCCCCATGTAATCAAACTAACACACGTTCAATACAANNTCG