Detailed information on CNT30578403


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Oryza barthiiSetaria viridis57.7563.6693.66205forward
CNT30440702Oryza barthiiAegilops tauschii76.3482.1294.1271forward
CNT30689646Oryza barthiiTriticum urartu62.2576.7494.12221forward
CNT30721908Oryza barthiiTriticum spelta76.3485.4994.1271forward
CNT30322845Oryza barthiiAsparagus officinalis10026.7182.54355forward
CNT30104304Oryza barthiiOryza rufipogon99.72100100354forward

Expression of CNT30578403

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VGVKPLGHLHSRDSGISPSHREVGAEPNLSTGP*

>peptide 2 (29 aa)
MSSALGQHQAWRSCQEPDHSTRRCCWGCT*

>peptide 3 (53 aa)
MYLIPASAICFQMLALRSVATFSKSSALLFPSQKDSRANLSSLLGPMRGYPTM*

Sequence

>CNT30578403
TAGTTGGTGTCAAACCACTTGGTCATCTCCATAGCAGGGACAGTGGCATTTCCCCTAGCCATCGAGAAGTAGGTGCTGAACCCAATCTCTCCACCGGTCC
ATGAGTAGCGCTCTGGGACAGCACCAAGCATGGCGGTCGTGTCAAGAACCTGATCATAGTACGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCGTC
AGCCATTTGCTTCCAGATGCTGGCCCTGAGGTCGGTCGCAACCTTCTCCAAATCCTCAGCGCTGCTCTTCCCATCCCAGAAAGACTCCAGGGCAAACTTG
AGCTCCCTCTTGGGGCCCATGCGGGGGTACCCAACAATGTGAGACGCCATCTTTC