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Detailed information on CNT30578401


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 8e-23

BLAST vs NONCODE:
NONORUT002251, E-value = 1e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Oryza barthiiSetaria italica28.0913.4888.54157forward
CNT30639598Oryza barthiiNymphaea colorata24.8723.2882.73139forward
CNT30533654Oryza barthiiEucalyptus grandis25.0428.5787.86140forward
CNT30549812Oryza barthiiIpomoea triloba25.9427.282.07145forward
CNT30514302Oryza barthiiJuglans regia23.6123.1290.15132forward
CNT30275526Oryza barthiiChenopodium quinoa25.5825.9185.31143forward
CNT30180424Oryza barthiiSecale cereale26.8323.1892.67150forward
CNT30221624Oryza barthiiHordeum vulgare26.8322.1292150forward
CNT30386243Oryza barthiiTriticum turgidum26.8322.1692.67150forward
CNT3084841Oryza barthiiVigna radiata23.7924.9183.46133forward
CNT30249706Oryza barthiiAvena sativa26.8323.1594150forward
CNT30467515Oryza barthiiSaccharum spontaneum27.0120.5291.39151forward
CNT30135597Oryza barthiiLolium perenne26.8329.0193.33150forward
CNT307034Oryza barthiiZea mays27.1919.2690.13152forward
CNT30624138Oryza barthiiDaucus carota25.2226.4585.11141forward
CNT30346089Oryza barthiiEragrostis tef26.1225.9891.1146forward
CNT30597257Oryza barthiiOryza meridionalis89.0999.898.59498forward
CNT30355824Oryza barthiiLactuca sativa25.5818.3381.12143forward
CNT30371492Oryza barthiiOryza glumipatula96.78100.7498.89541forward
CNT3053146Oryza barthiiAmborella trichopoda24.8722.0682.73139forward
CNT30108688Oryza barthiiOryza longistaminata3938.86100218forward
CNT30104475Oryza barthiiOryza rufipogon88.5588.0899.6495forward
CNT30581754Oryza barthiiEchinochloa crusgalli28.0920.5291.08157forward
CNT30118085Oryza barthiiOryza nivara88.5592.798.79495forward
CNT3065513Oryza barthiiSelaginella moellendorffii8.4120.793.6247reverse complement

Expression of CNT30578401

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKEQRPKASENKPVMNE*

Sequence

>CNT30578401
GGCCGCTCTTATACAGAAAGCAGCATCCCGTGCTTATAATCTCCATCCTTCTACCCCAGTATCCGGACACCCCGTGAAACCCTAGCGACTCTTGCCCCGG
CGGCGGCGGCGGCGGCGGCAGCAAAGGCGAAGATGATCTACGACGTGAACTCCCCTCTCTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCCTCCTCCGA
CAAGAGGAAAATGGAAGAGCAAAAGCCAAAGGAGCAGAGGCCCAAGGCCAGTGAGAACAAGCCTGTGATGAATGAATGAAGGCTTTCTGATGTGTTTGGT
CCTTACAAGGAATAGGCTTCAATCATGTGATTCCTAGTATGTTTCTGTACTGGTTCTGTTTAAGTGAGTTTGATGTGAACCATGTCTGGAACATCTGAGA
ACTTCCCAGCTATCAATCTTTAATTTTACATCTGAGAACTTCCCAGCTTATCAATCTTTAATTTAGCTTGATAATTTTCATGCGTGAGATGGAATGGGAT
GTTGCTTTGAGATTGATGGTTCAAGTTCCCGGTAAAGTTAATCTTGTCCAAACTTCGGC