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Detailed information on CNT30578398


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002490, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596893Oryza barthiiOryza meridionalis22.6310.4195.59136reverse complement
CNT30109132Oryza barthiiOryza longistaminata22.4616.8197.78135forward
CNT30101096Oryza barthiiOryza rufipogon22.466.294.07135reverse complement
CNT30116355Oryza barthiiOryza nivara22.4614.5593.33135forward

Expression of CNT30578398

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLGYIFNIGTMLLQQSESPMLQKAFHGYSCSTLNSQPKIVLQQSYN*

>peptide 2 (57 aa)
KLRMFEHLLKTFVYIMFNGRVVHNACLAIFSTSERCYYNNLNLLCYKRHFMVTVAAL*

Sequence

>CNT30578398
GAAATTACGGATGTTTGAACATCTCTTGAAGACATTTGTGTATATAATGTTCAATGGTAGAGTAGTACACAATGCATGCTTGGCTATATTTTCAACATCG
GAACGATGCTATTACAACAATCTGAATCTCCTATGCTACAAAAGGCATTTCATGGTTACAGTTGCAGCACTCTAAACTCTCAACCCAAAATTGTGTTACA
ACAATCATATAACTAGGTTATGTTTAGTTCAGCGCAAAGTTTGGATTTTGGTTGAAATTGAAGATGATGTGACTGAAAAGTTGTGTGTGTATGACATGTT
GATGTGATGGAAAAGGACTGAAGTTTGGATCCAAACTTTGGATCTAAACACAGCCCTAGTTGAAGACTTGTAGTTTTTTTTTTCTTTCACAAAGTACTGA
TATCCACGAACAACGACCAAGAAGGCACTGTTTTGCTGGAGGAGATTGTTATATGACAACTGGGCACTGACCAATACTTCTCCCCGAAGATAGCTCCAAG
AGTTGCTTTCAGTTTAGGGATGTGCTCTTGGTTAAAAAATAAAAAATCAGCATCAATTGGGAGGCAATGCATCCACAAGTTCATAATAAAGTTGAAAGAA
C