Detailed information on CNT30578397


BLAST search results

BLAST vs Swiss-Prot:
sp|P08626|ICI3_HORVU, E-value = 4e-12

BLAST vs NONCODE:
NONORUT002477, E-value = 2e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697884Oryza barthiiOryza sativa102.1270.3593.47337forward
CNT30286326Oryza barthiiTriticum aestivum24.859.987.882reverse complement
CNT30555553Oryza barthiiOryza glaberrima100.354.897.28331forward

Expression of CNT30578397

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVTGVPTGTTTMSASGMSLRITFFASSAGSPTTSGHDVFRS

>peptide 2 (65 aa)
MREASRWWGCWRRCRRRCGRGWGGIHGHRRPHRNHDDVGVGHVLEDHLLRLLRRQPHHLRPRRLPL

>peptide 3 (38 aa)
MVGVLATVPTKMRTRLGRNPWSPASPPEPRRCRRRACP*

Sequence

>CNT30578397
ACATAGGGTAAAACATTATTCAGATGGGGATGGATCGATTGAAACATACACAGTACATATCACTTGCGTGCATGTGATCATTATTTAATTAAGATAAAGA
TGGCCGGGGCCCGGTCGCTGAAGGAAGGCAGATGAGGGAGGCTAGCCGATGGTGGGGGTGCTGGCGACGGTGCCGACGAAGATGCGGACGCGGTTGGGGC
GGAATCCATGGTCACCGGCGTCCCCACCGGAACCACGACGATGTCGGCGTCGGGCATGTCCTTGAGGATCACCTTCTTCGCCTCCTCCGCCGGCAGCCCC
ACCACCTCCGGCCACGACGTCTTCCGCTCC