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Detailed information on CNT30578379


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002495, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693320Oryza barthiiOryza sativa84.5714.9791.92433forward
CNT30555739Oryza barthiiOryza glaberrima96.6829.6497.78495forward
CNT30104911Oryza barthiiOryza longistaminata57.6234.5488.81295reverse complement
CNT30117510Oryza barthiiOryza nivara28.7167.1289.8147forward

Expression of CNT30578379

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLACMLWLLLFRPVYGGCRLCRLSVYVDCPLSS*

Sequence

>CNT30578379
TGTCGACGTTTGAGGTCGCGATTCTGGTATTTGCATAGTATGGGGATCGTTGGTACCAGGGTATATGCGAGATTGAGGTAAAAGAGACGGAGACGAGGAT
TTTTATACAGGTTCGGGCCCCTGAATTGTCAGGTAATAACCCTACATCCTGTTGGCCGAAGCCGGTCGTTGCTCTTATTCATCATAATCACACTAGTACA
ATATTTGGGGTAGCCTATCTAACTGTTGTCGACATGACGGTCTGAAGGTCTGACTCGTAGTCGACAACAGGGTAGTCTTCCTCCTCGAATCCGTGCCTGG
CGAGATCAGAGATAGAGCTTTCGTCTCTCCTGACAGTATCCGGAGACACCGTAGGGGACTAGCCGTGCTTATCCCTGAAGTCGATATCTGGCGTCTTGTC
TTGGCGTATGTTGGCCTGTATGTTGTGGCTTCTTTTGTTCCGTCCCGTCTATGGTGGGTGTAGATTGTGTAGATTGTCCGTGTATGTTGATTGTCCCCTC
TCCTCCTAGGGG