Detailed information on CNT30578365


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL3|NLTP3_ORYSJ, E-value = 2e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697397Oryza barthiiOryza sativa22.7925.9100129forward
CNT30386779Oryza barthiiTriticum turgidum29.5122.380.24167forward
CNT30555884Oryza barthiiOryza glaberrima22.0837.99100125forward
CNT30436289Oryza barthiiAegilops tauschii29.5136.9581.44167forward
CNT30250949Oryza barthiiAvena sativa15.5521.9592.0588forward

Expression of CNT30578365

Peptides detected in this lncRNA

>peptide 1 (41 aa)
KCVYACISTTLLLLDYYIYEKYISSVHSTLHVNIETHYYII*

>peptide 2 (90 aa)
MEQMQIERENVEYLEQSTEVLMGKATETPHLLGMEAALPMLRFLKEEAMFLRQLQAVRRSADDEALPLRVLTPLQHGAIDDVTSPQLTAAD

>peptide 3 (91 aa)
MDGANADRERKCRILGAVDGGADGEGDGDAAFAGDGGGVAHVEVPEGGGHVLEAAAGGAAVGRRRGLAVEGPHPAAARRDRRRHVAAAHRRR

Sequence

>CNT30578365
CAAGTGTGTGTACGCTTGTATCAGTACAACATTATTATTATTAGATTATTATATATATGAAAAATATATAAGTAGTGTACATAGTACACTACATGTAAAC
ATTGAAACGCATTATTACATTATATAGTGCACGTACGCATGCAGCAAGAAAATAAACAAAGCTAGCAGTGAACAGTCACTCTCTAGATCTTCCCATACAT
ATCGATCTCAGCTGGAGATGATCAAGCTAGTAATTAGTTGATCCTGCATAAAAAAGGAAAGAGGAAATTAGCTTAATTAGGCCAACACATGGATGGAGCA
AATGCAGATAGAGAGAGAAAATGTAGAATACTTGGAGCAGTCGACGGAGGTGCTGATGGGGAAGGCGACGGAGACGCCGCATTTGCTGGGGATGGAGGCG
GCGTTGCCCATGTTGAGGTTCCTGAAGGAGGAGGCCATGTTCTTGAGGCAGCTGCAGGCGGTGCGGCGGTCGGCCGACGACGAGGCCTTGCCGTTGAGGG
TCCTCACCCCGCTGCAGCACGGCGCGATCGACGACGTCACGTCGCCGCAGCTCACCGCCGCCGACG